5HKH,1J0G,1L7Y,1WXS,5IAA,5L95


Conserved Protein Domain Family
Ubl_UFM1

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cd01766: Ubl_UFM1 
Click on image for an interactive view with Cn3D
ubiquitin-like (Ubl) domain found in ubiquitin fold modifier 1 (UFM1)
UFM1 belongs to the ubiquitin-like protein family with similar ubiquitin beta-grasp folds and mechanism of ligation to other proteins. UFM1 is present in nearly all eukaryotic organisms except fungi. Ubiquitin is a protein modifier in eukaryotes that is involved in various cellular processes including transcriptional regulation, cell cycle control, and DNA repair. The UNF1 cascade has been implicated in endoplasmic reticulum functions, cell cycle control and cell differentiation. The involvement of the UFM1 cascade in diseases is diverse; reports include its involvement in ischemic heart diseases, diabetes, gastric lesions, schizophrenia, hip dysplasia and cancer.
Statistics
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PSSM-Id: 340465
Aligned: 43 rows
Threshold Bit Score: 130.642
Created: 9-Jun-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
polypeptide
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Structure:5HKH; Homo sapiens UFM1 in complexed with UBA5, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                       ######   #  ##  #                                            
5HKH_A         7 VSFKITLTSDPRlPYKVLSVPESTPFTAVLKFAAEEFKVPa-aTSAIITNDGIGINPaQTAGNVFLKHGSELRIIP 81  human
B0G186         4 VTFKITLTSDPKlPFRVINVTEDTPFTAVLRFACEQFNVPw-qTSAIITNDGIGINPaQTSGNIFLKNGSDLRLIP 78  Dictyostelium disco...
XP_002364355   8 VSFKITLASDSKqPFKVLSVPDATPFSAVIKFAAEEFKVSa-aTCACITNDGVGINPqQAAGVIFLKHGGDLKLIP 82  Toxoplasma gondii ME49
XP_002683192   9 VTFKITLTSHPKqPFRTIKVPESAPFTAVLKYAAEEFQISa-eTSAILSNDGIGINPsQTAGNVWLKYGTDLRIIP 83  Naegleria gruberi s...
XP_003061787   4 VSFKITLTSDPKlPFRVLNVPEEAPFTAVLRYAAEEFKVPa-aTSAIITNDGVGINPaQTSGNVFLKHGSELRLIP 78  Micromonas pusilla ...
EPY29681      81 VTFRVILTSERSqPYRVISIAEEAPLTAVLRFAAEEFGIAsvdSMAATTKDGTGINPsQTAGTVFMKYGQEIRLIP 156 Strigomonas culicis
XP_005718698   7 VTFKIVLTSDPKlPFKVVNVPEKAPFTAVLKFAAEEFRVPs-aTSAIITNDGVGINPqQSAGNVFLKHGSELRLIP 81  carragheen
XP_005825880   7 VEFKITLTSDPKlPYKVVKVPENAPFTAVLKFAANEFKISa-eSSAIITNDNVGINPaQSAGNVFMKHGRDLRLIP 81  Guillardia theta CC...
CDW89789      34 VTFKITNASDPKlPFRTISVPEGAPFTACVKFVAEEFKVNp-gTTAIITNTGVGINPqQTAGTVFLKHGSELKMIP 108 Stylonychia lemnae
CEO96867       6 VTFKIVLASDPKlPFRVVSVPEQAPFTAVVKYVAEEFKVPf-eTSAIITEDGVGVQSkQTAGSVFLKHGTKLRLIP 80  Plasmodiophora bras...

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