2PUY,2YQL,2PUY


Conserved Protein Domain Family
PHD_PHF21A

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cd15523: PHD_PHF21A 
Click on image for an interactive view with Cn3D
PHD finger found in PHD finger protein 21A (PHF21A)
PHF21A (also termed BHC80a or BRAF35-HDAC complex protein BHC80) along with HDAC1/2, CtBP1, CoREST, and BRAF35, is associated with LSD1, a lysine (K)-specific histone demethylase. It inhibits LSD1-mediated histone demethylation in vitro. PHF21A is predominantly present in the central nervous system and spermatogenic cells and is one of the six components of BRAF-HDAC complex (BHC) involved in REST-dependent transcriptional repression of neuron-specific genes in non-neuronal cells. It acts as a scaffold protein in BHC in neuronal as well as non-neuronal cells and also plays a role in spermatogenesis. PHF21A contains a C-terminal plant homeodomain (PHD) finger that is responsible for the binding directly to each of five other components of BHC, and of organizing BHC mediating transcriptional repression.
Statistics
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PSSM-Id: 276998
Aligned: 13 rows
Threshold Bit Score: 73.969
Created: 8-Aug-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitehistone H3
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #        #  #    #  #              #  #
2PUY_B         7 FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49  human
2YQL_A        11 FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53  human
AAI24159     463 FCTVCRRSGQSLMCDTCSRVYHLDCLDPPLKNIPKGMWICPKC 505 zebrafish
XP_002117645 396 VCCVCNKGGELLICDTCNSVYHLRCLDPPLSSIPDGMWMCPDC 438 Trichoplax adhaerens
NP_001186576 490 FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPKC 532 chicken
XP_003731167 357 ICAVCRQIGELLMCDTCNLVYHLTCLDPPLAAVPPGAWSCPEC 399 purple urchin
ELU06619     329 FCALCQRSGELLMCDTCNLVYHLACLEPPLTTIPKGLWSCPKC 371 Capitella sp. I Grassle & Grassle, 1976
XP_002934140 488 FCSICRKSGQLLMCDTCSRVYHLDCLEPPLKTIPKGMWICPKC 530 western clawed frog
XP_001641353 324 ACSECKASGELLMCDTCTLVYHLSCLDPPLTTIPTGMWICPKC 366 starlet sea anemone
XP_002590926  98 FCSVCKTSGELLCCDTCNRVYHLHCLEPPLKAIPTGMWMCPQC 140 Florida lancelet
2PUY_A         7 FCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 49  human
XP_005108332 638 YCAVCGKGGQLLMCETCRLVYHLDCLNPPLTEAPKYAWSCPKC 680 California sea hare
XP_002735868 135 ICAVCKQSGELLMCDTCSLVYHLGCLDPPLSFIPAGIWICPQC 177 Saccoglossus kowalevskii

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