2OCC,1FFT,1M56,1QLE


Conserved Protein Domain Family
Heme_Cu_Oxidase_III_like

?
cd00386: Heme_Cu_Oxidase_III_like 
Click on image for an interactive view with Cn3D
Heme-copper oxidase subunit III. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. This group additionally contains proteins which are fusions between subunits I and III, such as Sulfolobus acidocaldarius SoxM, a subunit of the SoxM terminal oxidase complex. It also includes NorE which has been speculated to be a subunit of nitric oxide reductase. Some archaebacterial cytochrome oxidases lack subunit III. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that archaea acquired heme-copper oxidases through gene transfer from gram-positive bacteria.
Statistics
?
PSSM-Id: 238227
Aligned: 169 rows
Threshold Bit Score: 79.9401
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Subunit I/III
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:Subunit I/III interface [polypeptide binding site]
Evidence:
  • Structure:2OCC_C: interface with subunit 2OCC_A (subunit I), defined using 3.5 A contacts
  • Citation:PMID 8638158
  • Structure:1FFT_C: interface with subunit 1FFT_A (subunit 1), defined using 3.5 A contacts
  • Comment:Subunit III forms no interactions with subunit II.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1             ##             #   ##                                                     
2OCC_C       71 HTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAptpelggcwpptgihplnpLEVPLLNTSVLLASGVSITWAHHS 150 cow
CAA48549     41 TDAMTWPAAKVGLGVFLAVAGSLFTLFISAYSMRMNMvdw-------------rtmPVPKVLWFNTGVLVLSSVALQWAL 107 Bradyrhizobium j...
NP_102721    41 LDRSALPTAKIGLGVFLAVVGCLFALFTSAYFMRMAVsdw-------------qplPLPRLLWLNTGVLILSSVALQCTS 107 Mesorhizobium lo...
CAC47097     39 RGATRLPPAKIGLGVFLAVVGALFSLAISAYFMRMASsdw-------------galPLPGLLWLNTGILAAGSITLHWTK 105 Sinorhizobium me...
CAD73909      8 SVLPTDRRYRQGGWLFLGTLLVFFFSSLLLYGIYASSrlgdv----------qssvPLPNSFLTSTVLLLCISGLVHWST 77  Rhodopirellula b...
ZP_00207660 649 YVSGSGAVGWWAVWITMLGDSTAFASLVFGVFFYWTAgtdypp--------agaahADGPLALAALALGAASWALTLAAR 720 Rhodobacter spha...
CAG22261     28 LPADASSPAIIGLWVFMAVITMLFFLFTVAYKIRMSLndw-------------qplNEPWQLSLSTAMLLMSCVAMANCR 94  Photobacterium p...
ZP_00281578 691 FGFSHRSLMWWATAGLMLIEGTVFAMAVGMYFYLRTVnaawp---------mnappPSLVWGSLNTAVLVASLWPNQLAR 761 Burkholderia fun...
ZP_00309626  19 KPTFAMEPKKFLLWLFIVTIVMLFAAMTSAYLVRSTDgdw-------------lkfDLPNRFLVSTGVIILSSVTMQWAF 85  Cytophaga hutchi...
ZP_00593589  33 HGHGARTPGSLGLWVFMGVVTALFTLFLAAYIMRMDSpdw-------------qriALPWQVWLSTAVLAAACVAMEIAR 99  Ralstonia metall...
Feature 1                                                        ##  #   #                      
2OCC_C      151 Lmeg---drkHMLQALFITITLGVYFTLLQASEYYEApf------tISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFR 221 cow
CAA48549    108 Maarr-ndidGVVVGLLAGGASAIAFLAGQLLAWHQLsda---gyfMASNPANAFFYVITAVHGLHLTGGLVALGRTTAG 183 Bradyrhizobium j...
NP_102721   108 Vaarr-gqidTVRLGLATAGLTALAFLVGQLMAWRQLtad---gyfLASNPANSFFYLITGMHGLHVLGGLVGLGRTTTS 183 Mesorhizobium lo...
CAC47097    106 Veaer-rndeAARIGLLAGLALGLAFLAGQLFAWRALsda---gyfLAGNPANSFFYLLTGMHGLHIIGGLFALGRVTAH 181 Sinorhizobium me...
CAD73909     78 Rsvrr-skrvLTASLLALSAIAAVAFMAIQYVAMLGLlggp-amqgGTGKGVAGMVVVLAFLHALHVAGGVIALGIVSVR 155 Rhodopirellula b...
ZP_00207660 721 Eanrr-hrtgLARLCLSAAPLLTLATGAALIASPHVAgl------ePTEHVYPASMWVLVVWTVAHLIAGLIFQLYGLAG 793 Rhodobacter spha...
CAG22261     95 RkaallpsvvACRSILIVAVLFTLGFVFTQLWAWQYLvdq---nitVDNNPANSFFYLLTGLHGLHVLGGLAALFLVIYN 171 Photobacterium p...
ZP_00281578 762 Raaen-gereRARLWLLVCLAFAVAFLVVRGFEFAALnv------mWYANSYGSIVWLLLGLHTTHLITDTVDTAVLATL 834 Burkholderia fun...
ZP_00309626  86 Gaakn-nnrtMLLVALTGTIILGLIFLKLQVDGWGQLvdqkvflggRYSNPAGSFVYILSGLHGFHLITGLIYLLIVLYS 164 Cytophaga hutchi...
ZP_00593589 100 Raahs-grmvRARHAFRLGGMGAVAFVGVQLWAWQALyal---hvvPANNPAGSFFYLLTAMHGLHMLGGLVAFAFVAVD 175 Ralstonia metall...
Feature 1                                              
2OCC_C      222 Qlkfhf-tsnhhFGFEAGAWYWHFVDVVWLFLYVSIYWW 259 cow
CAA48549    184 VwrhdtgtaemrLSVELCTIYWHFLLLVWLVLLGLLTGW 222 Bradyrhizobium japonicum
NP_102721   184 Awtgtr-perlrLGVELCAMYWHFLLFVWLAIFALLAGW 221 Mesorhizobium loti MAFF303099
CAC47097    182 Asqtpl-gnrtrLSIELCAIYWHFMLIVWLVLFALFAGW 219 Sinorhizobium meliloti
CAD73909    156 Smlgky-dherhWPVDFAAQYWHFLDLVWLCMLATFVAT 193 Rhodopirellula baltica SH 1
ZP_00207660 794 Lifgri-tprydAPLWNSALFWHFLGLTVLVTVAMIAGA 831 Rhodobacter sphaeroides 2.4.1
CAG22261    172 Arkgha--nslyQSLHLCTRYWHFLLLIWLFLLGLLRFT 208 Photobacterium profundum SS9
ZP_00281578 835 Lytgpf-ekkrlLDTSENAVYWYFVVLSWLPIYAVIYFV 872 Burkholderia fungorum LB400
ZP_00309626 165 Sirtqa-gslnlLQIEMCTTYWHFLDLLWIYLFVFLQVN 202 Cytophaga hutchinsonii
ZP_00593589 176 Rgsgt----rtvTRIGLCARYWHFLLAVWVVLLGALGWL 210 Ralstonia metallidurans CH34

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap