5NDD,5NDZ


Conserved Protein Domain Family
7tmA_PAR2

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cd15370: 7tmA_PAR2 
Click on image for an interactive view with Cn3D
protease-activated receptor 2, member of the class A family of seven-transmembrane G protein-coupled receptors
Protease-acted receptors (PARs) are seven-transmembrane proteins that belong to the class A G-protein coupled receptor (GPCR) family. Four different types of the protease-activated receptors have been identified: PAR1, PAR2, PAR3, and PAR4. PARs are predominantly expressed in platelets and are activated by serine proteases such as thrombin, trypsin, and tryptase. These proteases cleave the extracellular domain of the receptor to form a new N-terminus, which in turn functions as a tethered ligand. The newly-formed tethered ligand binds intramolecularly to activate the receptor and triggers G-protein binding and intracellular signaling. PAR1, PA3, and PAR4 are activated by thrombin, whereas PAR2 is activated by trypsin. The PARs are known to couple with several G-proteins including Gi (cAMP inhibitory), G12/13 (Rho and Ras activation), and Gq (calcium signaling) to activate downstream signaling messengers which induces numerous cellular and physiological effects.
Statistics
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PSSM-Id: 341349
Aligned: 7 rows
Threshold Bit Score: 452.714
Created: 19-Nov-2008
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 45 residues -Click on image for an interactive view with Cn3D
Feature 1:putative peptide ligand binding pocket [polypeptide binding site]
Evidence:
  • Comment:also based on the structures of some class A family members with bound ligands (peptides or chemicals), agonists, or antagonists
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.
  • Structure:5NDD: Human protease-activated receptor-2 (PAR2) binds an antagonist AZ8838, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                               #  ##     #      ###### #
5NDD_A       205 VFLPIVYTIVFVVALPSNGMALWVFLFRTKKkaPAVIYMANLALADLLSVIWFPLKIAYHIhgnNWIYGeaLCNVLIGFF 284
5NDZ_A       205 VFLPIVYTIVFVVALPSNGMALWVFLFRTKKkaPAVIYMANLALADLLSVIWFPLKIAYHIhgnNWIYGeaLCNVLIGFF 284
NP_001073273  59 IFFPVLYIIVFSVGLPTNAMAIWVFLFRTKKkhPSSIFMANLALADLLFVIWIPLKIAYHFngnHWIFGeaLCKVLVGFF 138 zebrafish
NP_001012626  69 VFLPTVYVIVFIIGLPSNAMAIWVFFFRTKKkhPAVIYMVNLALADLLFVVWFPLKIAYHLngnNWLFGegLCKVLVGFF 148 chicken
NP_001088939  68 AFLPAVYIIVFIIGLPSNAIALWVFFFRTKKkhPSMIYMANLALADLMFVIWLPLKIAYHLngnNWIYGevLCKVLIGFF 147 African clawed ...
NP_001107409  59 IFFPVLYIIVFSVGLPTNAMAIWVFLFRTKKkhPSSIFMANLALADLLFVIWIPLKIAYHFngnHWIFGeaLCKVLVGFF 138 western clawed ...
P55085        76 VFLPIVYTIVFVVGLPSNGMALWVFLFRTKKkhPAVIYMANLALADLLSVIWFPLKIAYHIhgnNWIYGeaLCNVLIGFF 155 human
Feature 1        #  #                                           # #####                ###       
5NDD_A       285 YANMYCSILFLTCLSVQRAWEIVNPMgHSRKKaNIAIGISLAIWLLILLVTIPLYVVKQtifipalqITTCHDVLpeqll 364
5NDZ_A       285 YANMYCSILFLTCLSVQRAWEIVNPMgHSRKKaNIAIGISLAIWLLILLVTIPLYVVKQtifipalqITTCHDVLpeqll 364
NP_001073273 139 YGNMYCSTAFIACISVQRYWAIVHPLsQQKRNnRLAVCVSVCVWLVVWALTVPLYLYDQtvkvtnmdIVTCHDVTrpsq- 217 zebrafish
NP_001012626 149 YGNMYCSILFMTCLSVQRYWVVVNPIvHSRRKsEIALGISLAIWILILLGTIPLYLVNQtvyisdlnITTCHDVLpenil 228 chicken
NP_001088939 148 YGNMYCSILFMTCLSVQRYWVIVNPIsHTRKNtKRALIVSITIWVVIMLGTIPLYLINQtlylsdlgITTCHDVLpldla 227 African clawed ...
NP_001107409 139 YGNMYCSTAFIACISVQRYWAIVHPLsQQKRNnRLAVCVSVCVWLVVWAITVPLYLYDQtvkvtnmdIVTCHDVTrpsq- 217 western clawed ...
P55085       156 YGNMYCSILFMTCLSVQRYWVIVNPMgHSRKKaNIAIGISLAIWLLILLVTIPLYVVKQtifipalnITTCHDVLpeqll 235 human
Feature 1           #  ### ### ##                                                                
5NDD_A       365 vgdMFNYFLSLAIGVFLFPAFLTASAYVLMIRALadlednwetlndnlkviekadnaaqvkdaltkmraaaldaqkatpp 444
5NDZ_A       365 vgdMFNYFLSLAIGVFLFPAFLTASAYVLMIRALadlednwetlndnlkviekadnaaqvkdaltkmraaaldaqkatpp 444
NP_001073273 218 slyPCIYFLTMGVVGFVVPCLVCIVSNVQMLRALkssmn----------------------------------------- 256 zebrafish
NP_001012626 229 ahdMFKYFLSLAIGLFLIPAVITAVAYILMIKTLnasis----------------------------------------- 267 chicken
NP_001088939 228 tidMFNYFLALSIGVFFLPAILTAVVYTLMIRTLtasit----------------------------------------- 266 African clawed ...
NP_001107409 218 slyPCIYFLTMGVVGFVVPCLVCIVSNVQMLRALkssmn----------------------------------------- 256 western clawed ...
P55085       236 vgdMFNYFLSLAIGVFLFPAFLTASAYVLMIRMLrssam----------------------------------------- 274 human
Feature 1                                                                                        
5NDD_A       445 kledkspdspemkdfrhgfdilvgqiddalklanegkvkeaqaaaeqlkttrnayiqkylenseKKRKRAIKLAVTVAAM 524
5NDZ_A       445 kledkspdspemkdfrhgfdilvgqiddalklanegkvkeaqaaaeqlkttrnayiqkylenseKKRKRAIKLAVTVAAM 524
NP_001073273 257 -----------------------------------------------------------dpsivQKRKKAIILIVTVLVM 277 zebrafish
NP_001012626 268 -----------------------------------------------------------distgKKRKRAIKLIIAVLSM 288 chicken
NP_001088939 267 -----------------------------------------------------------desigKKRNRAIRLIIIVLVM 287 African clawed ...
NP_001107409 257 -----------------------------------------------------------dpsivQKRKKAIILIVTVLVM 277 western clawed ...
P55085       275 -----------------------------------------------------------denseKKRKRAIKLIVTVLAM 295 human
Feature 1            #  ## ##  #           ## ###  #  ##                     
5NDD_A       525 YLICFTPSNLLLVVHYfliksqgqshVYALYIVALCLSTLNSCIDPFVYYFVShDFRDHA 584
5NDZ_A       525 YLICFTPSNLLLVVHYfliksqgqshVYALYIVALCLSTLNSCIDPFVYYFVShDFRDHA 584
NP_001073273 278 FLVCFTPSNIMVMVHYallfngvknsGYGFYITTLCLASLNSCVDPFVYYFISdEFREHV 337 zebrafish
NP_001012626 289 YLICFTPSNVLLVVHYvllknynqssLYVSYITALCLSTLNSCIDPFIYYYISkDFRDNL 348 chicken
NP_001088939 288 YLVCFLPSNVLLVIHYgslknsysanLYAFYITALCLSSLNSSIDPFVYYFVSkDFRDHV 347 African clawed frog
NP_001107409 278 FLVCFTPSNIMVMVHYallfngvknsGYGFYITTLCLASLNSCVDPFVYYFISdEFREHV 337 western clawed frog
P55085       296 YLICFTPSNLLLVVHYfliksqgqshVYALYIVALCLSTLNSCIDPFVYYFVShDFRDHA 355 human

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