2BZ0


Conserved Protein Domain Family
GTP_cyclohydro2

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cd00641: GTP_cyclohydro2 
Click on image for an interactive view with Cn3D
GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (FAPy), an activity that has otherwise been reported for unrelated GTP cyclohydrolases III.
Statistics
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PSSM-Id: 238348
Aligned: 109 rows
Threshold Bit Score: 188.478
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitedimerization
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:2BZ0: Escherichia coli GCHII binds the GTP analog, GMPCPP, Zn2+, and Mg2+, contacts at 4.5 A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                   ##
2BZ0_A      2 QLKRVAEAKLPtp----------wgDFLMVGFEElat-----------------ghDHVALVYGdisg----htpVLARV 50  Shigella flexneri
YP_119124  14 LTRKGAELTVR--------------VRELPADRD----------------------GGSVLVFGeig------qdCLVRI 51  Nocardia farcinica...
YP_476491 165 VVTKAAIEPVWylpgiakrlqvsesLLRRTLFEQtggmfpelvtrpdlsvflppigGQTVYIIGqvaaitdpalpLAVRV 244 Synechococcus sp. ...
YP_548793 197 MVTKAAIEPVWylpevarrfgcsetDLRRVLFEEtggmypelvtrsdlevflpsigGQTVYIFGnpqdlanpaieLTARV 276 Polaromonas sp. JS666
NP_986521 187 RVSKIAVEQVWylpgiakrfgmseeELRTTLFEHtngmypelvtrpdlkvflppigGLTVYIFGnpldvsdpakkLTLRV 266 Ashbya gossypii AT...
YP_096253 176 VVTKAAIEPVWylpgiaerfqvseaLLRRTLFEQtagmfpelvtrsdldvflppigGLTAYFFGdvttihnpeieLTCRI 255 Legionella pneumop...
NP_773877 164 SVVKIAIDPVWylpglatrfgtgetELRRTLFEQtagmfpelvtrpdmkvflppigGTTVYMFGdvsklpdhrtkITCRV 243 Bradyrhizobium jap...
BAE62110  187 RVTKVAVEPVWylpgvadrfgvsepILRRTLFEHtggsypelitrpdlkvflppigGLTVYIFGppervsdenvkLALRI 266 Aspergillus oryzae
NP_593508 190 AVTKVAVEPVWylpgvaerfgvdevTLRRALFEQmggaypelitrpdikvflppigGLTAYIFGppeylsdtsksLAVRV 269 Schizosaccharomyce...
XP_756533 304 SVSKAAVDPVWylpgvaerlgvtegALRRAIFEDtggsypelltrhdlkvflppisGLTVYIFGrpedlrdptkeVTVRI 383 Ustilago maydis 521
Feature 1     #### #        # #  #                        ####      #   #  #           #      
2BZ0_A     51 HSECLTGDALFSlRCDCGFQLEAALTQIAEeg----rGILLYHRQEGRNIGLLNKIRAYALQDq------gYDTVEANHQ 120 Shigella flexneri
YP_119124  52 HSRCLYGDALQSdDCDCGPELERSMDLIQAeg----rGVLVYLDQEGRGAGLVAKARGLREAErt-----gADTFTAYTR 122 Nocardia farcinica...
YP_476491 245 HDECNGSDVFGSdICTCRPYLVHSIEECVKtaqaggaGVIVYLRKEGRALGEVTKFLVYNARKrqeggdraDAYFARTEC 324 Synechococcus sp. ...
YP_548793 277 HDECNGSDVFGSdICTCRPYLTHAIEECIQgaqrggvGLVAYSRKEGRALGEVTKFLVYNARKrqvggdtaDQYFARTEC 356 Polaromonas sp. JS666
NP_986521 267 HDECNGSDVFGSdICTCRPYLIFAIEEGVKqaqaggsGVVIYFRKEGRALGEVTKYLVYNARKrsg--dhaAEYFKRTER 344 Ashbya gossypii AT...
YP_096253 256 HDECNGSDVFGSdICTCRPYLVHGIELSIEsaqkggaGLIVYNRKEGRALGEVTKFLVYNARKrqkggdtaAKYFERTEC 335 Legionella pneumop...
NP_773877 244 HDECNGSDVFGSdICTCRPYLIHGIEESARgaqegglGLVVYNRKEGRALGEVTKFLVYNARKrqedgdaaAAYFERTEC 323 Bradyrhizobium jap...
BAE62110  267 HDECNGSDVFQSdICTCRPYLAFGIREAIReaqnggsGVVIYFRKEGRALGEVIKYLVYNARKrgg--dtaDKYFTRTEN 344 Aspergillus oryzae
NP_593508 270 HDECNGSDVFQSdICTCRPYLTFGIEEAAKeaqnggaGLVVYFRKEGRALGEVVKYLVYNKRKrtg--dsaENYFKRTEE 347 Schizosaccharomyce...
XP_756533 384 HDECNGSDVFGSdICTCRPYLLFGIEECIKtaqrggaGAVIYFRKEGRALGEVTKYLVYNARKrgt--dsaSNYFKRTEN 461 Ustilago maydis 521
Feature 1          # #                     ###  #                                             
2BZ0_A    121 LgfAADERDFTLCADMFKLLg-VNEVRLLTNNPKKVEILTeagINIVERVPLivgr----------npnNEHYLDTKAEK 189 Shigella flexneri
YP_119124 123 LgyPEDARSFRLAAAAIAELg-LRRVRLLTNNPDKAAALTd-lGVAVTVVPLttrp---------rsarARKYLQDKRAH 191 Nocardia farcinica...
YP_476491 325 VagVQDIRFQELMPDVLHWLgiTRIDRLISMSDLKYRAITnsgIEVVQRVPIpeelipadarveieakkAAGYYTEGEVL 404 Synechococcus sp. ...
YP_548793 357 VagVQDMRFQELMPDVLSWLgvRKIHRLVSMSNMKFDAIIkagIEIGERVNIpdalipedarvemdakmAAGYFTPGPVP 436 Polaromonas sp. JS666
NP_986521 345 IagTEDMRFQQLMPDVLKWLgvTKVDRLISMSHMKYNAIAdcgIKVLERVPIpselipadshveieakvHSGYFTHDKVP 424 Ashbya gossypii AT...
YP_096253 336 VagVQDMRFQELMSDILHWLgiTKIHRFVSMSNMKYDALLksgINVIERVKIpdelippdarveidakrAAGYYSPEGII 415 Legionella pneumop...
NP_773877 324 VagVQDARFQQLMPDTIHWLglKRIDRFLSMSDMKHDALTsqgIDIVERVPIppelipadayveiaakkAAGYYSTDIAP 403 Bradyrhizobium jap...
BAE62110  345 IagVRDMRFQALMPDILHWLgiKKIDRMLSMSNMKHDAIVqsgIKILERVPIpedmipddsrveidakiNAGYFTTGRQY 424 Aspergillus oryzae
NP_593508 348 LagVRDMRFQALMPDILHWFgiKKIDRMLSMSNMKHDAIVgqgIKILNRITIpddlipedsqveidakiQSGYFSEKKVT 427 Schizosaccharomyce...
XP_756533 462 IagVKDMRFQALMPDVLHWLgaTNITNWISMSNMKHDAAVnsgIKIKNRYELpeelipadsrveidakiQAGYFSATKQL 541 Ustilago maydis 521
Feature 1          
2BZ0_A    190 MGHLL 194 Shigella flexneri
YP_119124 192 RRHWL 196 Nocardia farcinica IFM 10152
YP_476491 405 DAERL 409 Synechococcus sp. JA-2-3B'a(2-13)
YP_548793 437 DAEEL 441 Polaromonas sp. JS666
NP_986521 425 SVTDL 429 Ashbya gossypii ATCC 10895
YP_096253 416 DINEL 420 Legionella pneumophila subsp. pneumophila str. Philadelphia 1
NP_773877 404 EKDVN 408 Bradyrhizobium japonicum USDA 110
BAE62110  425 TMEEL 429 Aspergillus oryzae
NP_593508 428 EDDLS 432 Schizosaccharomyces pombe 972h-
XP_756533 542 TEEDL 546 Ustilago maydis 521

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