4JQ0,1Q1U


Conserved Protein Domain Family
beta-trefoil_FGF12

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cd23328: beta-trefoil_FGF12 
FGF domain, beta-trefoil fold, found in fibroblast growth factor 12 (FGF12) and similar proteins
FGF12, also called fibroblast growth factor homologous factor 1 (FHF1), or myocyte-activating factor, is involved in nervous system development and function. It plays a role in the positive regulation of voltage-gated sodium channel activity. It promotes neuronal excitability by elevating the voltage dependence of neuronal sodium channel SCN8A fast inactivation. FGF12 interacts with the C-terminal region of SCN9A. FGF12 contains a FGF domain with beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry.
Statistics
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PSSM-Id: 467014
Aligned: 6 rows
Threshold Bit Score: 288.073
Created: 6-Apr-2021
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
heterodimer
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:4JQ0; Homo sapiens FGF12 interacts with SCN5A, contacts at 4A
  • Comment:Voltage-gated sodium channel 1.5 C-terminal domain in complex with FGF12B and Ca2+/calmodulin

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         # # #                                    #  #                                  
4JQ0_A        68 PQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKF 147 human
1Q1U_A         6 PQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKF 85  human
NP_990219     68 PQLKGIVTRLFSQQEYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKAGLYVAMNAEGYLYSSDVFTPECKF 147 chicken
P61328        68 PQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKF 147 human
NP_001071250  67 PQLKGIVTRLFSQQGFYLQMQPDGSIDGIKGENSDYTLFNLIPVGLRVVAIQGVKAGFYIGMNGEGFLYSSEMFTPECKF 146 zebrafish
XP_029686364  83 PQLKGIVTRLFSQQGFYLRMQPDGTIDGSKDENSDNTLFNLIPVGLRVVAIQGVKSGFYIAMNGEGMLYSSEMFTPECKF 162
Feature 1         # # ##                                             #      
4JQ0_A       148 KESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKtKPSSHFVPKPIEVC 206 human
1Q1U_A        86 KESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKtKPSSHFVPKPIEVA 144 human
NP_990219    148 KESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKtKPSSHFVPKPIEVC 206 chicken
P61328       148 KESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKtKPSSHFVPKPIEVC 206 human
NP_001071250 147 KESVFENYYVIYSSTMYRQQESGRAWFLGLTKEGQVMKGNRVKKtKPSSHFVPRPIEVC 205 zebrafish
XP_029686364 163 KESVFENYYVIYSSTVYRQQESGRAWFLGLTKEGQVMKGNRVKKtKPSSHFVPRPIEVC 221

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