1VDX


Conserved Protein Domain Family
2_5_ligase

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TIGR02258: 2_5_ligase 
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2'-5' RNA ligase
This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. [Transcription, RNA processing]
Statistics
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PSSM-Id: 274058
Aligned: 23 rows
Threshold Bit Score: 131.638
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1VDX_A         1 MRAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEkyKK--HEVKVKGI 78  Pyrococcus hori...
AAP11606       3 LHYFVAITLPNHIKEMLSNYKEDMQEELQFRSWVHKEDYHITLSFLGSATGEQLEGIKNGLKTIAE--TKe-LSFTLQGF 79  Bacillus cereus...
BAC14254       5 SHYFIGIDLPNHVKQNLIEVQQKLPSSFSYKQWTHKFDFHITLTFLGEIDDKQLTNVEQYLNNLEK--KP--FFLTLDQL 80  Oceanobacillus ...
O34570         6 PHYFIGVPIPEGIANPIYQAAKNEP-ILTFQKWVHPLDYHITLIFLGAADETQIKKLEGSLAEIAS--EIdpFSIKFGKI 82  Bacillus subtil...
AAK25623       2 IRLFTAIAIPPQIGQGLLPRQG----GIEGARWRPLEAFHITLRFVGDVAEDLAADLDEALAQITA--PA--FDLELASA 73  Caulobacter cre...
AAR33370       2 YRLFVAIDLPGSVRAQLADLGR----ELDGVRLVPPDQLHLTLRFIGNADDECFQRIKDSLATVTS--PP--FTLALAGV 73  Geobacter sulfu...
CAD85312       8 VRLFFALWPQEAVRKQLARLARRIA-DQCAGRCVRPENLHLTLAFIGEVDSSVVPILRQAGSAIHR--TS--FDLLLDKL 82  Nitrosomonas eu...
CAE30932      26 PRLFFALWPDPATAARLADWAAHAQ-LAYGGRVMRTDTLHLTLAFLGAATPAQAAELCAATAARRI--AP--ATLALARY 100 Bordetella bron...
P37025         5 QRLFFAIDLPAEIREQIIHWRATHF-PPEAGRPVAADNLHLTLAFLGEVSAEKEKALSLLAGRIRQ--PG--FTLTLDDA 79  Escherichia col...
WP_010899411   4 THYFLAISLPDEIKKQLDTFVQRHKQSLPFKKWTHLEDYHITLVFLGAQPHDRLERLVTACQKLGE--HItsFPIQLEGL 81  Bacillus halodu...
1VDX_A        79 GVFPNPNYIRVIWAGIENDe-IIREMAREIEDELAKLGFKKE-GNFVAHITLGRVKFVKdkLGLTMKLk-----eLANED 151 Pyrococcus hori...
AAP11606      80 STFGREDQPRIFWAKVSENh-DLFQLQKQIHAICEENGFSLEtRPYHPHITVARKWIGE--EKFRLES-------IKEVP 149 Bacillus cereus...
BAC14254      81 GVFGNQKQPRVLWAGLEHSn-ELHELHHQISHMLTQLELSKDnRPYRPHITLAKKWNDS--TILLDSNqldrmqqIGQSV 157 Oceanobacillus ...
O34570        83 DVFGDRRKPRVLHLEPKKNk-TLDRLREHTKQAVLQAGFQVEkRPYHPHMTLARKWTGE--DGFPAHVp------FE-SG 152 Bacillus subtil...
AAK25623      74 GHFGEGADIHAVWAGVDESa-PLRQLQKSHERAARTAGLKPEsRLYTPHVTLAYLKRPSv-PEVGAWLq-----aNNLLR 146 Caulobacter cre...
AAR33370      74 GCFPSPRRPRVIWAGITPNe-RLTLLQRAVEKAVAAAGIPPEeRPFCPHITLARLKEAIp-EGFPAFQs-----rHGGLS 146 Geobacter sulfu...
CAD85312      83 HCWGK---GSIIAAGVSQPcgELTVLVQDLRNQLSAAGVRYDtVKFVPHVTLVRNAKREp-EQKh---------fPETIP 149 Nitrosomonas eu...
CAE30932     101 GLFAR---QRIVWAGPQQAdaALAALHDDLWTWLRALGWPAPqQGFQPHVTLLRNVDAHa-AA------------PAPPP 164 Bordetella bron...
P37025        80 GQWLR---SRVVWLGMRQPprGLIQLANMLRSQAARSGCFQSnRPFHPHITLLRDASEAv-TI------------PPPGF 143 Escherichia col...
WP_010899411  82 STFGQEERPRIFWAGVRDSa-ELSAFQQSVKTCCQQEEISVErRPYRPHVTLAKKWIGK--GSFKEVAs-----eVSQPP 153 Bacillus halodu...
1VDX_A       152 FGSFVVDAIELKKSTLTPKgPIYETLARFEL 182 Pyrococcus horikoshii OT3
AAP11606     150 EISFQADTITLYESHVKET-PKYKSIAEIKL 179 Bacillus cereus ATCC 14579
BAC14254     158 ETSFEVETIHLFKIYPQQM-PKYQKYRSFSL 187 Oceanobacillus iheyensis HTE831
O34570       153 EVSMMAERFSLFQIHLNQS-PKYEEIFKFQL 182 Bacillus subtilis subsp. subtilis str. 168
AAK25623     147 SPSFRVDRFGLYSSWQTREgSAYRLEREYLL 177 Caulobacter crescentus CB15
AAR33370     147 AEPFTVEEFLLYSSTLTAGsALHRREASYRL 177 Geobacter sulfurreducens PCA
CAD85312     150 PVAWAADRWSLVQSRPTPYgSAYQSFADWAL 180 Nitrosomonas europaea ATCC 19718
CAE30932     165 PVAWRYDHYALVQSQPQHGrASYRVLARTAA 195 Bordetella bronchiseptica RB50
P37025       144 NWSYAVTEFTLYASSFARGrTRYTPLKRWAL 174 Escherichia coli K-12
WP_010899411 154 ARLLHVTSFHLYRSHIGKT-PSYEITESFPL 183 Bacillus halodurans
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