Conserved Protein Domain Family
7tmA_CCR6

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cd15172: 7tmA_CCR6 
CC chemokine receptor type 6, member of the class A family of seven-transmembrane G protein-coupled receptors
CCR6 is the only known receptor identified for the chemokine CCL20 (also known as macrophage inflammatory protein-3alpha, MIP-3alpha). CCR6 is expressed by all mature human B cells, effector memory T-cells, and dendritic cells found in the gut mucosal immune system. CCL20 contributes to recruitment of CCR6-expressing cells to Peyer's patches and isolated lymphoid follicles in the intestine, thereby promoting the assembly and maintenance of organized lymphoid structures. Also, CCL20 expression is highly inducible in response to inflammatory signals. Thus, CCL20 is involved in both inflammatory and homeostatic functions in the immune system. Chemokines are principal regulators for leukocyte trafficking, recruitment, and activation. Chemokine family membership is defined on the basis of sequence homology and on the presence of variations on a conserved cysteine motif, which allows the family to further divide into four subfamilies (CC, CXC, XC, and CX3C). Chemokines interact with seven-transmembrane receptors which are typically coupled to G protein for signaling. Currently, there are ten known receptors for CC chemokines, seven for CXC chemokines, and single receptors for the XC and CX3C chemokines. The CC chemokine receptors are all activating the G protein Gi.
Statistics
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PSSM-Id: 341330
Aligned: 6 rows
Threshold Bit Score: 405.678
Created: 15-Dec-2013
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative chemokine binding site [polypeptide binding site]
Evidence:
  • Comment:based on structures of chemokine receptors with bound ligands (chemokines, peptides, or chemical antagonists/agonists)
  • Comment:Small-molecule chemical ligands tend to bind deeper within the receptor core, compared to a peptide ligand neurotensin, which binds towards the extracellular surface of its receptor.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                #  #                #  ##
P51684        47 LFVPIAYSLICVFGLLGNILVVITFAFYKKarsMTDVYLLNMAIADILFVLTLPFWAVSHatgaWVFSNatCKLLKGIYA 126 human
NP_001107553  35 VFLPVAYSLICIVGLVGNIFVVMTFALYERtksMTDVYLFNMAIADILFVLTLPLWAVNYaadkWIFGNfiCKMAKGIYA 114 chicken
NP_001093461  33 FLRLFIHPIICVAGFIGNSLVIVTYALYKRtksMTDVYLLNVAIADILFVVALPLIIYSEqh-sWAMGNmsCKLLRGIYS 111 zebrafish
XP_002935872  35 KFAPVVLSLIFAVGLVGNLLVVITFRYYKRtksMTDVYLLNMAVADILFVLTLPFWTVNYhkgeWIFKDfmCKFIRSIYA 114 western clawed ...
XP_005997623  64 IFVPVIYLFVCVFGLIGNSLVIVTYAFYKKsksMTDVYLVNLAIADLFFVLTLPFNAVYRas-qWVFTEipCKLVRGIYG 142 coelacanth
XP_007892708  50 VFIPILYIIIFVMGIIGNGLVVITYVFYKKmrsMTDLYLLNLAVADIMFIATLPFWAVYEsn-qWIFGTfvCKFLKGVYS 128 elephant shark
Feature 1                                                                                        
P51684       127 INFNCGMLLLTCISMDRYIAIVQatKSFRLRSRTlPRSKIICLVVWGLSVIISSSTFVFNQKYntq-------------- 192 human
NP_001107553 115 INFSCGMLLLAFISVDRYIAIVQatKSFKLRARTlAYSKLICLAVWASAILISSSSFLYSESYdfat------------- 181 chicken
NP_001093461 112 VNLYSGMLLLACISGDRYLAIVQarRSFRLRSSTlLYSHLVCAAVWLLALLLSLPTFIFYERYengltestflfnnntim 191 zebrafish
XP_002935872 115 INFTCSMLLLACVGIDRYVAIVQvtKSFRFRTTTmAYKRVICFSVWIMSACLSGLTYYFSKCYkyn-------------- 180 western clawed ...
XP_005997623 143 INFYSSMLMLALISIDRYIAIVQatRSFKMRAATlAYSRYICIAVWIFASMISVPDFVFSSVYmhdl------------- 209 coelacanth
XP_007892708 129 INFYSGVLLLAVISVDRYIAIVHatKSFNYRGKAlLYGKIICAVTWLLVITASLPDFIYCEVYdftt------------- 195 elephant shark
Feature 1              ######        #  ##                                                      #
P51684       193 --gsdVCEPKYQtvsepirwKLLMLGLELLFGFFIPLMFMIFCYTFIVKTLvqaqNSKRHKAIRVIIAVVLVFLACQIPH 270 human
NP_001107553 182 -netqICDHRFDktsdsivlKSLLLCLQVGFGFFIPFVFMIFCYAFIVKSLqqaqNSKRNKAINVIVLIVVVFLVCQVPY 260 chicken
NP_001093461 192 eeiqyVCSFKFEsnetarmmKTIVPSSQVAVGFFLPLLIMGFCYSSVIVTLlrakNFQRHKAVRVVLTVVLVFVVCHMPY 271 zebrafish
XP_002935872 181 --erfVCEASYPedatalkwKLAVIIVQISLGFCIPFFVMFFCYLCIIKTLlqahNSQRHKAIRVIVAVVAVFLVCQVPY 258 western clawed ...
XP_005997623 210 -dnrtVCEPKYPmgfg-sqlKLLTLGMQITIGFCIPLWIIITCYSFIINTLhqaqNFQRHKAVRVVIAVVLVFLLCQVPY 287 coelacanth
XP_007892708 196 -sgqkLCEIRYPkews-kigKLIAPSIQLSLGFFGPLLVMFFCYSMIIHTLlrvrSLQRHKAVRVVMAVVAAFVVCQVPY 273 elephant shark
Feature 1              #  #          #   #  ##  #                         
P51684       271 NMVLLVTAANLgkmnrsCQSEKLIGYTKTVTEVLAFLHCCLNPVLYAFIGqkFRNYF 327 human
NP_001107553 261 NTVLLMAVANMgkaeksCDSDNIMAYAKYTTETIAFLHCCLNPVLYAFIGvkFRSYF 317 chicken
NP_001093461 272 NLVLLYHTINLfeq-qeCSHEEAVALTMTITESLAYLHSCLNPLLYAFIGvnFRNHF 327 zebrafish
XP_002935872 259 NVVLVIKATQLgrtdgiCSKNINYAYAFFITETVAFFHCCLNPVIYAFVGvkFRNYF 315 western clawed frog
XP_005997623 288 NIILLNEAINFfe--dtCSTKKFNTMAYYITQCLAFFHCCLNPVLYAFIGvkFRNYF 342 coelacanth
XP_007892708 274 NITTLIETSVKnl---hCEALKRLSLAKTVTKCLAFFHCCLNPILYVFIGvkFRFYF 327 elephant shark

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