4RAJ,1DVE,1IW0,1N3U,1WE1,1WOV,1XK2,3I9T,4MEC,5BTQ,5KZL


Conserved Protein Domain Family
HemeO

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cd19165: HemeO 
heme oxygenase in eukaryotes and some bacteria
This subfamily contains heme oxygenase (HO, EC 1.14.14.18) found in eukaryotes as well as some proteobacteria, including cyanobacteria. Heme oxygenase (HO) catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. In vertebrates, HO plays a role in heme homeostasis and oxidative stress response, and cellular signaling in mammals that include isoforms HO-1, HO-2 and HO-3. HO-1 is ubiquitously expressed after induction while HO-2 expression is constitutive, mostly limited to certain organs, such as the brain, testes, and the vascular system. HO-3 is non-functional in humans, suggesting that the Hmox3 gene is a pseudogene derived from HO-2 transcripts. In higher plants and cyanobacteria, heme oxygenase is required for the synthesis of light-harvesting pigments, which contain tetrapyrrols derived from biliverdin. Candida albicans expresses a heme oxygenase that is required for the utilization of heme as a nutritional iron source, whereas Saccharomyces cerevisiae responds to iron deprivation by increasing Hmx1p transcription, which is controlled by the major iron-dependent transcription factor, Aft1p, and promotes both the re-utilization of heme iron and the regulation of heme-dependent transcription during periods of iron scarcity. In pathogenic bacteria, HO is part of a pathway for iron acquisition from host heme. In Leptospira interrogans, a pathogenic spirochete that causes leptospirosis, HO is required for iron utilization when hemoglobin is the sole iron source, thus making HO an interesting target for novel antimicrobial agents. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.
Statistics
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PSSM-Id: 350856
Aligned: 423 rows
Threshold Bit Score: 64.1516
Created: 15-Jun-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:1DVE: Rattus norvegicus heme oxygenase-1 in complex with heme; contacts at 4.0A
  • Structure:5KZL: Leptospira interrogans heme oxygenase in complex with heme; contacts at 4.0A
  • Structure:5BTQ: Homo sapiens heme oxygenase-1 with biliverdin bound; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #      #  ##              #   #                                           
4RAJ_A     19 PLTKRLSKASRKIHNVSNSLv----------NARLIAlfs------dkdLYAKALGCFYYVFVALEAALDEAlkkgdadv 82   Chlamydomonas rei...
1DVE_A     12 DLSEALKEATKEVHIRAENSe----------FMRNFQkgqv-----sreGFKLVMASLYHIYTALEEEIERNkqnpvya- 75   Norway rat
CBJ29262  106 FVQWDMRRAAMKLHTRDQSPkegkqenkgtkFSDWKPsr---------rGYLQFLVDSKVVYEALEEACGSDprlae--- 173  Ectocarpus silicu...
EFJ22374  115 PFYEQLVKRIQLLESKGDIAv----------VQPRKLppfekw-kfgekKYVQYLVDQRAVYRALGSAIEICaaiedsva 183  Selaginella moell...
EFN53782    9 SMKLHTKAQAPKEGKAAEPKdq-------kpVGGWFApt--------rpGFLHFMGESKVVYEAFEEILDQAavpyyk-- 71   Chlorella variabilis
KFM25680   16 AFLGELRQYAMRLHTREQAPr----------EGKAAApkpdkpwepklaGYMQFMAESKVVYDTFEELLAAGaqpyyk-- 83   Auxenochlorella p...
CEM07662  119 FINGPLRRAAMKLHTRDQAKe----------GEQPAQtpftkw-apglaDFMQFLVDSKHVFETLERCVNETaelka--- 184  Vitrella brassica...
KOO31539   53 FVQTEMRGAAMALHTRDQAPr----------EGKQPAqrpmsswqptraDYLQFLVDSRKVYRTLEEIVEETemfas--- 119  Chrysochromulina ...
OAE23355  181 PFYEKLVNRLQLLESKGEMSv----------AQAKPLpsfdrw-vfgeeRYMQFLMDQRAVFQALRDVIASIhsercgsv 249  Marchantia polymo...
PNR46458  105 DFVEELRFQATRLHIEEQGNs----------QVFKSAss--------aeEYLKFLVVSKMVYETMEVIVINSshpayd-- 164  Physcomitrella pa...
Feature 1                                                                                     
4RAJ_A     83 s--------------kfkdvlkggLYRAPGFKQDVQHYLGATWqaqlg---------tksqALKDYEAHLASLGRss--- 136  Chlamydomonas rei...
1DVE_A     76 -----------------plyfpeeLHRRAALEQDMAFWYGPHWqeai----------pytpATQHYVKRLHEVGGth--- 125  Norway rat
CBJ29262  174 -------------------frntgLERTEALTKDIAWMLEAYPdswaeggggdgkapspteNALEYASFLREKVAst--- 231  Ectocarpus silicu...
EFJ22374  184 -----------------ifndklgLNRSSAIEADLTAMQKESSlstlp---------epntQTLAYVKYIEQLANpspgq 237  Selaginella moell...
EFN53782   72 ------------------qltntgLERSEPLAKDIAYMQQQWGmeapv--------aaedgPGHTYAKLLRELAVss--- 122  Chlorella variabilis
KFM25680   84 ------------------efaatgLQRGAAIDHDLAYLSERYGvpipe--------akpdgPGHTYASELRELAAnk--- 134  Auxenochlorella p...
CEM07662  185 -------------------lrgsgLERTAALDRDVRYLLELDPslsvp---------pvgqPGRAYAELLLSKLDeg--- 233  Vitrella brassica...
KOO31539  120 -------------------frasgLERGAALDKDIAWFAATHGekep----------avksQGETYAAELRKMVAdg--- 167  Chrysochromulina ...
OAE23355  250 avledglalggatkavslfaedlgLDRCKALDLDISFFTELLTargeqfa----efptpttQAVGYAKYIRQLGAsslek 325  Marchantia polymo...
PNR46458  165 ------------------ilkkaeLVRVKRLTQELHWFASQGYaipe-----------agpAGISYANHLMKLSQtn--- 212  Physcomitrella pa...
Feature 1                     ###     ##   #                                                  
4RAJ_A    137 --------pALLLAHVYTQHLAMASGGQIVKRWARKIfqlp--------------------------ddvGTAAFDYtge 182  Chlamydomonas rei...
1DVE_A    126 --------pELLVAHAYTRYLGDLSGGQVLKKIAQKAmalp-------------------------ssgeGLAFFTFpsi 172  Norway rat
CBJ29262  232 --------lPGFMCHYYNHYFAHTAGGRMIGRKVAESalgvffkhvsaf----------pfrsdscldgrTLEFYQWgsd 293  Ectocarpus silicu...
EFJ22374  238 seeksrekrLRLLAHIFGVNVSHLSTGMRIGAKAVEClpvl-------------------------serkAFSFYHVy-- 290  Selaginella moell...
EFN53782  123 --------pPAFLCHYYNHYFAHTAGGRMIGKSVSNAvld----------------------------gwTGAFYQWeg- 165  Chlorella variabilis
KFM25680  135 --------pGPFLCHFYNHYFAHTAGGRMIGKQVSQRild----------------------------gwTGNFYKWdg- 177  Auxenochlorella p...
CEM07662  234 --------iPVFMNHYYNTYFAHSAGGRMIGRRMCDTllg----------------------------ghLLHFYRWeqp 277  Vitrella brassica...
KOO31539  168 -------elERFVCHFYNFYFAHTAGGRMIGKRMAGMlld----------------------------ghTLEFYQWdgd 212  Chrysochromulina ...
OAE23355  326 sd-kakdacLKFLAHVFSVYVSHLTTGMRIGAKAMDNiail-------------------------rqanAVSFYRDypl 379  Marchantia polymo...
PNR46458  213 --------vPAFIGHLHNVYFAHSAGDQFLVQKVFARvaeglargnlgnvqrkakksllhsngagrktgrTLLFWAAtvc 284  Physcomitrella pa...
Feature 1                                     #   #                             #  #   #   
4RAJ_A    183 ---------------------------snNTLRSAFKKQFDEwgaa----qpqELQDQLLSEHLAAFGHNNAIIKAF 228  Chlamydomonas reinha...
1DVE_A    173 --------------------------dnpTKFKQLYRARMNTlem------tpEVKHRVTEEAKTAFLLNIELFEEL 217  Norway rat
CBJ29262  294 ---------------------------dvKVLLDGVRVKIDAmakg----wseEEKEACVSETARTFNLRVFFVGRM 339  Ectocarpus siliculosus
EFJ22374  291 ----------------------------pEGVKDPIKVLIAAfnqvghlitaeDDREEVMQELPRAIQKASLLLSSL 339  Selaginella moellend...
EFN53782  166 ---------------------------dvKERLDAVRATINGiaae----wsqEEKDACMQETPKTFGWGGRLVQLI 211  Chlorella variabilis
KFM25680  178 ---------------------------nvKDMLDDVRGKLESvaqt----wsdEEKNACLEETAATFSWGGKLLRLV 223  Auxenochlorella prot...
CEM07662  278 dthtatenhhhheqghhasgsgsgdrsviEGLLAGVREKIDRmals----wteEEKQKCIDETPNAFRYGGGLLSHL 350  Vitrella brassicafor...
KOO31539  213 ---------------------------vdQVLLPGLRTKIDAlvag----wsrEQKDKCLAETANSFKGGGAMMQHI 258  Chrysochromulina sp....
OAE23355  380 ---------------------------egKDPLKLFIQTINSaglc---ilseEDHEQVMEELPKAMQRTSLLLSVL 426  Marchantia polymorph...
PNR46458  285 lalwaggirpay---aggdgsgvlappsiGNMKSSVVGTLKAmwp------ktQQVLEVLRDQGLFLSLLLALSAFF 352  Physcomitrella patens

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