3OBC,2OIG,2OIG


Conserved Protein Domain Family
NTP-PPase_RS21-C6_like

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cd11537: NTP-PPase_RS21-C6_like 
Click on image for an interactive view with Cn3D
Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in mouse RS21-C6 protein and its homologs
RS21-C6 proteins, highly expressed in all vertebrate genomes and green plants, act as house-cleaning enzymes, removing 5-methyl dCTP (m5dCTP) in order to prevent gene silencing. They show significant sequence similarity to the dimeric 2-deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTP pyrophosphatase or dUTPase) and NTP-PPase MazG proteins. However, unlike typical tandem-domain MazG proteins, RS21-C6 contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. Divalent ions, such as Mg2+, are required for its pyrophosphatase activity. This family also includes a pyrophosphatase from Archaeoglobus fulgidus (Af1178). Although its biological role remains unclear, Af1178 shows significant sequence similarity to the mouse RS21-C6 protein.
Statistics
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PSSM-Id: 212144
Aligned: 110 rows
Threshold Bit Score: 90.2728
Created: 4-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:E E E DClick to see conserved feature residue pattern help
Evidence:
  • Structure:3OBC; Archaeoglobus fulgidus Af1178 binds Zn2+, contacts at 4.0A
  • Comment:Most of members the NTP-PPase superfamily contain the well-conserved divalent ion-binding motif, EEED.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    #  #                            #  #                
3OBC_A        17 LDILREFRDSRGWlKYHTPKNLAVSISIEVAELLEIFQWtrssdeefe-vlerrkgeVEEEIADVLIYLLFLCDVAeINP 95  Archaeoglobus f...
ZP_08693844    8 KENVKKFRDDREWsQFHNPKDLAISLSIEAAELLECFQWkssaeae-----knnyqdIRYEMADVAIYLLLMCDKMgINL 82  Fusobacterium v...
AAG21389       8 INAINEFRDERNWrQYHNPKDLAISISIEAAELLEDFQWisseeal-----kankenIREEIADILIYSFMLCNDLgLDV 82  Bacillus lichen...
AET68741       5 IQKVVKFRDLRNWkQYHNPKDLAISLSIEASELLENFQWktseesv-----snnyarIQDELADVLIYALLLSNELkIDP 79  Desulfosporosin...
YP_002608147   7 QRIISDFRDERDWkQFHTPKNLAVSISIEAGELLEHFQWkegce---------nkkdISYEMADILAYLLLLADECsIDL 77  Nautilia profun...
AEQ07523       8 LRALLNFREQRNWaQFHSPANLAKSVAIEAGELLECFQWddevt---------dinaVRDELADVLSYAYLLAHELgSNP 78  Corynebacterium...
AEV28092      82 IGKILKFRDDRDWkQFHNPKDLAISISLEAAELLECFQWsssdtqv-----vekkqaMREELADVLIYCVMMADALhADI 156 Spirochaeta sp....
YP_003606108   7 LKQLLAFRDARDWrQFHTLRNLIVSTGIEAGELLETIQWksdaqidallsdpeqstnLRHECADVFMYLLLVAHTAgFDL 86  Burkholderia sp...
AEV27122      24 TEAILAFRDERDWkQFHSLRHLIVSLNLEAAELLELTQWksdadmaalvadpagreaLADECADVLLYLLLLTAEAgIDL 103 Dechlorosoma su...
YP_002886503   8 MDKVIEFRDERDWaFHHNPKDLALSLSLEASELLEVFQWvsseeal-----etkkmeMEEELADVLIYALTFAHAAgIDV 82  Exiguobacterium...
Feature 1                   
3OBC_A        96 IEAVKRKXEKN 106 Archaeoglobus fulgidus
ZP_08693844   83 LDAIEEKMKLN 93  Fusobacterium varium ATCC 27725
AAG21389      83 KEIVEEKIVKN 93  Bacillus licheniformis
AET68741      80 QQAIIEKMKKN 90  Desulfosporosinus orientis DSM 765
YP_002608147  78 EKAFLEKMEIN 88  Nautilia profundicola AmH
AEQ07523      79 HDLIINKMKQT 89  Corynebacterium pseudotuberculosis CIP 52.97
AEV28092     157 TSLVLEKLHKN 167 Spirochaeta sp. Grapes
YP_003606108  87 VDAAAEKLKLN 97  Burkholderia sp. CCGE1002
AEV27122     104 PAAALAKIGKN 114 Dechlorosoma suillum PS
YP_002886503  83 SKAIEDKLVKN 93  Exiguobacterium sp. AT1b

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