Conserved Protein Domain Family
SNAPC5

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pfam15497: SNAPC5 
snRNA-activating protein complex subunit 19, SNAPc subunit 19
SNAPc19 is a family of proteins found in eukaryotes. It is one of the five core components of the snRNA-activating protein complex or SNAPc that helps direct the nucleation of RNA polymerases II and III. The core RNA polymerase II snRNA promoters consist of a single essential element, the proximal sequence element (PSE), whereas the core RNA polymerase III snRNA promoters consist of both a PSE and a TATA box. The SNAPc binds to the PSE of both of these. SNAPc recognizes the PSE sequence common to all human snRNA genes, irrespective of polymerase specificity. SNAPc is also known as the PSE transcription factor (PTF) or PSE-binding protein (PBP). The human SNAP19 and SNAP45 subunits are dispensable for transcription in vitro and are not as widely conserved as the other three, SNAP190, SNAP43 and SNAP50, suggesting that these vertebrate-specific SNAPc subunits may have adapted specialized regulatory roles for snRNA gene transcription.
Statistics
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PSSM-Id: 464748
Aligned: 58 rows
Threshold Bit Score: 43.8731
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
KNC24453      14 VQKEQVQLVQIENILTNLLTQVNESINELKVEELQIKSSLIEQYTSNNCDELPTTSAqaasrhn------siqpttdPLS 87 
XP_015781060  12 IRAKLKKLKEEEKILVKLLQRVDEQLNALRVEEIIIRRHLRSDNTASMFTTDLP-----------------------VTD 68 
KZS09112      12 KEAALAAFKREALSIEKISRDVKDQLNRLKVEELDIMNRQREKEVKNALNSASVDLLt------------------sHSA 73 
KZC07048      17 LLAFQRDLKQEKEFLVKLLTKIDSQVHRLQVEQLHLLGMMNKSMK--------------------------------ESE 64 
XP_003249503  18 LLAFQRELKQEKELLQKILTKIDDQVHRLQVEQLHLLGLMNKSLK--------------------------------GTT 65 
KOC62745      21 LLAFQRDLKQEKELLQKILVKIDDQVHRLQVEQLNLLGIMNKSLK--------------------------------GTK 68 
KDR06588       9 LIAKQRQLLIEESIILDVLKKVRDEMHKLQVEQLQLDSMIMAEDGNKER----------------------------YSR 60 
PNF38562       9 LIAEQRHLIVEKSIILDLLRKVRDEMHKLQIEQLQLDSMIMTENGLLRENGSRKR----------------------DIN 66 
OWR48847      13 RISEEVQLLAEKKWIIDALAKIKNQRNSLQIERLHLESLKAKLNINTNKKDTNTSKDggvesssssalnlmknynsgKKP 92 
XP_004925798  12 RIAEETQLLAEEKWITDALSKIKKQRNCLQIERLHLESMKSQLKLKKSAQ---------------------------QNS 64  domestic silkworm
KNC24453      88 IEQTNIKMDMEGIDDI-------------NKQILALETLlvplkkekykeeeeeeydDDEEEDDDE 140
XP_015781060  69 GTEQTSNSEAEMGTEA----------------TLHLEVDevlralvqn-gqgnnksnQQEVEEEDE 117
KZS09112      74 ILTEHPSGIELQADQV-------------NKTHLDLSMApnsalm----------nnsnpgDSSDD 116
KZC07048      65 EKSPSHESNHETEQDT-------------SNKSLDLSIAsal------------kyfQEEEEDEDM 105
XP_003249503  66 ENSSSYEPENDIQQDS-------------TNKSLDLSVAsaf------------khfEEEIEDEDD 106
KOC62745      69 ERSPKHESTSDNQENT-------------TNKFLDLSVAsaf------------dyfKEEVEDEDD 109
KDR06588      61 KNVPALMTDMDSTEKV-------------NQEKLDLSVTsslkkml-----dgqfhaEQEEEEEEE 108
PNF38562      67 GSAPAESTDMDS-ENI-------------NEEKLDLTVSsalnkml-----hgqffaEQEEEEEEE 113
OWR48847      93 ILDDNLLQEDLNDEAMc------------NDEELNLGISnmdy----------gkidNTEEDEGSD 136
XP_004925798  65 NVESNVEQPSTESPTRefefevpiinedcNNEELNLSMGnlvdtvy-----ydveveEDEDEEING 125 domestic silkworm
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