Conserved Protein Domain Family
bHLH_AtFAMA_like

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cd11448: bHLH_AtFAMA_like 
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein FAMA and similar proteins
The family includes several bHLH transcription factors from Arabidopsis thaliana, such as FAMA, MUTE and SPEECHLESS, which work together to regulate the sequential cell fate specification during stomatal development and differentiation. FAMA, also termed AtbHLH97, or EN 14, is a transcription activator required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. It mediates the formation of stomata. MUTE, also termed AtbHLH45, or EN 20, is required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. It promotes the conversion of the leaf epidermis into stomata. SPEECHLESS, also termed AtbHLH98, or EN 19, is required for the initiation and the formation of stomata, by promoting the first asymmetric cell divisions. FAMA, MUTE and SPEECHLESS form heterodimers with SCREAM/ICE1 and SCRM2 to regulate transcription of genes during stomatal development.
Statistics
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PSSM-Id: 381454
Aligned: 13 rows
Threshold Bit Score: 134.782
Created: 14-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Arabidopsis thaliana MYC2 (5GNJ) binds DNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1       ##  ## ##   #                  ##                                       
Q56YJ8    197 MTHIAVERNRRKQMNEHLRVLRSLMPgSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRILGETGRDMTT 270 thale cress
ABR16546  250 MTHIAVERNRRKQMNEHLSVLRSLMPgSYIQRGDQASIIGGAIDFVKELEQLLQSLQAQKRKRECEEFGCSPNS 323 Sitka spruce
Q700C7    102 MSHVTVERNRRKQMNEHLTVLRSLMPcFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRVV 175 thale cress
Q9M128    115 MTHIAVERNRRRQMNEHLNSLRSLMPpSFLQRGDQASIVGGAIDFIKELEQLLQSLEAEKRKDGTDETPKTASC 188 thale cress
Q9SK91    115 MTHIAVERNRRKQMNEYLAVLRSLMPsSYAQRGDQASIVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTS 188 thale cress
Q9C7T4    125 MTHIAVERNRRKQMNEYLAVLRSLMPpYYAQRGDQASIVGGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQT 198 thale cress
Q56XR0     88 MTHIAVERNRRRQMNQHLSVLRSLMPqPFAHKGDQASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSST 161 thale cress
O81037    193 MTHIAVERNRRRQMNVHLNSLRSIIPsSYIQRGDQASIVGGAIDFVKILEQQLQSLEAQKRSQQSDDNKEQIPE 266 thale cress
Q700E4    178 INHIAVERNRRRQMNEHINSLRALLPpSYIQRGDQASIVGGAINYVKVLEQIIQSLESQKRTQQQSNSEVVENA 251 thale cress
Q9FKQ6    102 MNHIAVERNRRKQMNHFLSILKSMMPlSYSQPNDQASIIEGTISYLKKLEQRLQSLEAQLKATKLNQSPNIFSD 175 thale cress
PNR30819  324 MTHIAVERNRRKQMNEHLAALRALMPgSYVQKGDQASIVGGAIEFVKELEHLLHCLQAQKRRRAYNDISTAVIP 397 Physcomitrella patens
EFJ06465  403 QTHIAVERNRRKQMNEHLNVLRSLMPgSYVQRGDQASIIGGAIEFVKELEQLLQCLQAQKRRRLYSDAFSPKPS 476 Selaginella moellendorffii
Q9M8K6      1 MSHIAVERNRRRQMNEHLKSLRSLTPcFYIKRGDQASIIGGVIEFIKELQQLVQVLESKKRRKTLNRPSFPYDH 74  thale cress

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