1QQE,2IFU


Conserved Protein Domain Family
SNAP

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cd15832: SNAP 
Click on image for an interactive view with Cn3D
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.
Statistics
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PSSM-Id: 276937
Aligned: 50 rows
Threshold Bit Score: 208.587
Created: 15-Nov-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 38 residues -Click on image for an interactive view with Cn3D
Feature 1:TPR repeat [structural motif]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                     ######################################             
1QQE_A         3 DPVELLKRAEKKGVPssgfmklfsgsdSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKa-gNEDEAGNTYV 81  baker's yeast
2IFU_A         9 EAHEHIAKAEKYLKTsfx-------kwKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANn-rSLFHAAKAFE 80  zebrafish
Q6VZX2        15 KATKLLEEAERKLKNsksffk-nlfgfPVEFEQASELANRSANLFKSIKKWEDSGKAFLMSAQLILNndkYSIEAASNFV 93  Canarypox virus
Q70HD9         9 KATKILEDAENKIKGksffk--nlfgpPIEIEEAAGMVSHAANLFASVQLWECAGKAFFKSGDMLLQknkNSIAAASSFV 86  Fowlpox virus i...
A0CSA0         8 KGDEFMMKGDKALKGstfgn--ifgskGERAEKALELYKSAATQYKLGKKWEKASEAYQRCITCDQTl--KSGETGDFYV 83  Paramecium tetr...
XP_003885763  16 DIPDLLKKADNLLRPagfls--sllgrGSDPDAALSIYTQCAQRYKLARQWNDAADCYVRASLAAERg-dDKSTQAQMLA 92  Neospora caninu...
XP_001017966   8 EAQELMKKGDKKLKGgifsg--ifsskGERAEQALDCYKAAAAKFKLSDMWDEAAEAYIKCAKCEEAs--DGTSVGEYYQ 83  Tetrahymena the...
XP_001311582   5 KAEGLIAEGQKALKKffg-------skKDKAYDASDKFCHAARLYKIDRNFEKAGECFLMAADALHNv-gDDNSASSHYI 76  Trichomonas vag...
Q9SPE5         4 DPDKMMSKADKMTKLtlt-------rwSADWRGATELYEQAANGFRASNKYEKAKVALEKASKGQEMq-aSPWDAAKHME 75  thale cress
O90758         4 EAYRLISEANRRLKDvgflfswkflrnVNNVKEVGNLLIRSAILFKAVKNWELAGYSFLKAAVLQSQesdFVLDTAINFV 83  Fowlpox virus
Feature 1                                                                                        
1QQE_A        82 EAYKCFKSGg-nSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEndl--------hdYAKAIDCYELAGEWYAQDq 152 baker's yeast
2IFU_A        81 QAGXXLKDLq-rXPEAVQYIEKASVXYVENGTPDTAAXALDRAGKLXEpl----------dLSKAVHLYQQAAAVFENEe 149 zebrafish
Q6VZX2        94 DAYNVFKRVd--VQEAINCLNKAINIYVYLGKFNTAAKCHMNIAEVYDkda--------ldIDKAIENYETASEYYRGDg 163 Canarypox virus
Q70HD9        87 DAANAFKKId--SYEAINCLSKAIEVYTCLGKFYTVARCHMNIAAIYEndi--------leLDKAIFHYENASGYYGGEg 156 Fowlpox virus i...
A0CSA0        84 EAAKAISNVn--KAESIQLYEKAIEHYANENRLDNASRYKKEIAQIYEse---------leFHLAVKAYQEAADLFQADg 152 Paramecium tetr...
XP_003885763  93 EAGNVLKRVs--ASNSEEQLVAAAAVYIQQGRWSQAGKLYRSIAEMYEddttsglggkgdgLSKVMLYYKKAAETYELDd 170 Neospora caninu...
XP_001017966  84 EAANMKKRTd--KHECIVLLKQAVEFYQHQDRQGTAGKIQKQIAEIYEqe---------geMENAMASYQEASKIFSLEt 152 Tetrahymena the...
XP_001311582  77 DSTLMFFKVqamTAKAHEALDKAVDILCTLDSPAKSAQLIVKSCELLEke---------qaYDLAIQAYNKALGLLTDMp 147 Trichomonas vag...
Q9SPE5        76 SAAALAQKLs-iWNEVADFYRKASELYVECGRAQPASDALGKAARALEdv----------kPDDAIQLYTDACEILEEDg 144 thale cress
O90758        84 NASNMYRKId--PKKSIECLLQAIEVYKSINNFTTAAKHQMTVAEIYEsci--------mdLEKACMHYEYATEYYREEg 153 Fowlpox virus
Feature 1                                                                                        
1QQE_A       153 -sVALSNKCFIKCADLKAld--gqYIEASDIYSKLIKSSMGnrlsQWSLKDYFLKKGLCQLAatDAVAAARTLQEGQSED 229 baker's yeast
2IFU_A       150 -rLRQAAELIGKASRLLVrq--qkFDEAAASLQKEKSXYKExe-nYPTCYKKCIAQVLVQLHraDYVAAQKCVRESYSIP 225 zebrafish
Q6VZX2       164 -hTKLSDDCMLKVASLLIqk--eeFIKAASIFEKIGYDRINssmlKYAARQQLFYAAMCHFRv-DVLNAKFAIDRYKKVF 239 Canarypox virus
Q70HD9       157 -yNKLSDDCMLLIARLSIqk--edFDRAGKIFEQVGYNRMNtmlsKYESRHQLLYAIMCYLCs-DVSRAKRSLDKYKDIF 232 Fowlpox virus i...
A0CSA0       153 krISDYNQMRLKVAELSTqnasgdLIAAIKIFEDIGDKYMEnkltAPSAKELYFKSCLLYLCnnDSVGCGIALERYLDKD 232 Paramecium tetr...
XP_003885763 171 ygKSAFSQCRCKYAEYAAkne-daLHEAVQIFEQEGDKATRnnllQFSAKDFYLKALVLLLSsgDAVSAHIALERYMGRD 249 Neospora caninu...
XP_001017966 153 nsTSDFLNMKIKVADFQSeep-ttYNQAIIAYEEIGKKYSEnkltQGIAGNIFFKSLLLSLAtgDYIGAQNHIEDYMNVC 231 Tetrahymena the...
XP_001311582 148 dvSALQASIHEKKAYLFCek--rnYNEAAKSFTEAATLRNQipltQTSAQSTFVVAELCRLAagDLQGAIKEYDNIVYQC 225 Trichomonas vag...
Q9SPE5       145 -rDQMAFDLYRACANVYIkl--ekFTDAATFFLRLGVAADKcd-aTNSQCKAYLSAIILYLYahDLQQAEKCYNDCSQID 220 thale cress
O90758       154 -sIKSANDCMIKVADCFTrm--kqFDKAASVYEQIGIICMRlpilKHRIKDQFLKAILCHFCi-GDKDMRLIVGYYTELY 229 Fowlpox virus
Feature 1                                                                
1QQE_A       230 PNFaDSRESNFLKSLIDAVNEgDSEQLSEHCKEFdnf-mrLDKWKITILNKIKESI 284 baker's yeast
2IFU_A       226 GFS-GSEDCAALEDLLQAYDEqDEEQLLRVCRSPlvtyxdNDYAKLAISLKVPGGG 280 zebrafish
Q6VZX2       240 PAFeDFRECKFIEKIVESYENeDVDTFTNIVREYdni-skLDNVITSMLLHIKKSI 294 Canarypox virus
Q70HD9       233 PAFkDFKECKFIEKILAACETkNIETFTSAIEEYdhg-ntIDEALMSMLLTIRKAT 287 Fowlpox virus isolate HP-438/Munich
A0CSA0       233 PSFaSARQYKFVVNLIKAVDNnNAQMFSDECFEFnki-ipLDKWKLNVLNKIKEGM 287 Paramecium tetraurelia
XP_003885763 250 PRFeGSREGRLATALVAAMQEgDVDAFTAALDDFdri-skLDPWKIHFLLKAKRRL 304 Neospora caninum Liverpool
XP_001017966 232 PPFtNTRQAKLINKLIECFETnNIEEFSQQCFEYnqi-ipLDRWQLRVLNQAKEHL 286 Tetrahymena thermophila
XP_001311582 226 PSIkVNFEGRYFNAIMDAAQN-TPEKLPEAIKAYkdt-heNAKWMVDILNLIQNPD 279 Trichomonas vaginalis G3
Q9SPE5       221 AFL-KSDQSRSASRLLTAYNEgDIEEIKKVASAStv--snLDHMIIKLARKLPTGD 273 thale cress
O90758       230 AQFiDYREYTLIMKVVESCDTcNLDILVDALREYgsv-trLDYILTIMLLEIKKNI 284 Fowlpox virus

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