4AJ5


Conserved Protein Domain Family
SKA3_N

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cd12957: SKA3_N 
Click on image for an interactive view with Cn3D
Spindle and kinetochore-associated protein 3, N-terminal domain
SKA3, also called RAMA1 or C13orf3, is a component of the SKA complex, which is formed by the association of three subunits (SKA1, SKA2, and SKA3). The SKA complex is essential for accurate cell division. It functions with the Ndc80 network to establish stable kinetochore-microtubule interactions, which are crucial for the highly orchestrated chromosome movements during mitosis. The biological unit is a W-shaped homodimer of the three-subunit complex. SKA3 contributes to SAC (spindle-assembly checkpoint) signaling through its interaction with Bub3. This model represents the N-terminal domain of SKA3, which is involved in interactions with SKA1 and SKA2 to form the SKA complex. The C-terminal portion of SKA3 is involved in creating a microtubule-binding surface.
Statistics
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PSSM-Id: 240570
Aligned: 7 rows
Threshold Bit Score: 149.087
Created: 1-Feb-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 28 residues -Click on image for an interactive view with Cn3D
Feature 1:SKA1 interface [polypeptide binding site]
Evidence:
  • Comment:The SKA complex, essential for accurate cell division, is formed by the association of three subunits (SKA1, SKA2, annd SKA3).
  • Structure:4AJ5: Interface between SKA1 and SKA3 in the Human SKA complex structure; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #   #  #   #   #  ##        #   ##  #  ##  ## ##  ## ##  ## ##   #  #  # 
4AJ5_1         3 PIRSFCGKLRSLASTLDCETARLQRALd--gEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATK 80  human
XP_001518936   3 VIGNFYGKLRALALTLEKETAQLERALsa-qETDFEEESPMRLLHDMHSEVRTLKGDVQTLLEKNHSERQGSYDFIKATK 81  platypus
XP_417142      3 VSRDFFSKLRSLALTVEKEAKQLERALng-eDADYEEESPMRVLHDLHCNIRDLKEGANAALDKSASERQEINDFMKASE 81  chicken
XP_003219301   3 VTSNFFDKLRTIALTLERESKHLKQGFhg-nDTEFEDDSPMTYLHEMYSDIRTLKSEADNILQKSSSERDTAYDFLKASK 81  green anole
B0BM16         3 VTGNFFSKLRSLAVTLEKETGQLEQLFss-eDNEYEEESPMRVLHDLRSDIMVLKGDFQSTLNKRLARGQELSAFIKACR 81  western clawed ...
Q58EL7         3 PSERFFSKLRKLTVYLETESSSLLHTSqnlkEDEEDEETGAQALYQLHSEVRALKRQVRDQVATHDTSSADLRSFIRRCL 82  zebrafish
XP_001636133   4 DRFEFFSRFRHFGSSLDKDCSDLKTRLeepsEGSNNEGRCHVVLREILSDVVELKNNASNQLSKARESSISFGEFMGACE 83  starlet sea ane...
Feature 1                             
4AJ5_1        81 VLMEKNSMDIMKIREYFQKYG 101 human
XP_001518936  82 LLRQRNTVDIVKLRELFQKYG 102 platypus
XP_417142     82 ILMQRNAADLAKIRELFQKYG 102 chicken
XP_003219301  82 VLMKRNAGDLEEIRQLIQKYG 102 green anole
B0BM16        82 VLHERTAADIEQIKETFQTYG 102 western clawed frog
Q58EL7        83 VLKQRTTEDIDSLKKHYEKYG 103 zebrafish
XP_001636133  84 KLATNTKENIDILENHLLKYG 104 starlet sea anemone

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