1PR9,3D3W,1CYD


Conserved Protein Domain Family
XR_like_SDR_c

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cd05351: XR_like_SDR_c 
Click on image for an interactive view with Cn3D
xylulose reductase-like, classical (c) SDRs
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).
Statistics
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PSSM-Id: 187609
Aligned: 8 rows
Threshold Bit Score: 396.841
Created: 3-May-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1PR9_A         1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALG-SVG 75  human
3D3W_A         1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALG-SVG 75  human
1CYD_A         1 MKLNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKALG-GIG 75  house mouse
AAH97532       1 MEINFCGRRALVTGAGKGIGRETAKALRKTGAEVVALSRSYEDLESLARECP----GVQTICVDLADWSATEKALS-SIG 75  African clawed ...
Q8JIS3         3 PDLSFRGRRALVTGAGKGIGRAVAVALCKAGARVTALSRTAADLESLVRECP----GIEPLCLDLADWDATEAAVG-AAG 77  chicken
NP_001017619   1 MEISFRGKRALVTGAGKGIGRATALALARCGSEVTAVTRTKADLDSLVQECP----SIKPVCVDLSDWDATKEALN-NVG 75  zebrafish
NP_573333      1 MWTDLAGKVILVTGAGAGIGQALVKQLASAGATVIAVARKPEQLQQLVAFDPv---HIQPLQLDLSGWQAVREGLA-KVP 76  fruit fly
NP_506182      3 ANYDFTDKRILVTGASQGIGKEICLSLAKAGAQVIAFARNEANLLSLVKETTslryTIIPIVGDVSANEEVLFKLIvPHF 82  nematode
Feature 1                                       #                            #            #   #  
1PR9_A        76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIArgvPGAIVNVSSQCSQRAVTNHSVYCSTKGA 155 human
3D3W_A        76 PVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIArgvPGAIVNVSSQXSQRAVTNHSVYCSTKGA 155 human
1CYD_A        76 PVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINrgvPGSIVNVSSMVAHVTFPNLITYSSTKGA 155 house mouse
AAH97532      76 PVDILVNNAAVAILQPFLAVTEEAFDRSFAVNVKAVLHVSQIVVHQMIErgvPGAIVNVSSQASQCALLDHSVYCSTKGA 155 African clawed ...
Q8JIS3        78 PFELLVNNAAVAMLQPFLQVTREAVERSFDVNFRAVLHVSQIVARQMIAqglPGAIVNVSSQASQRALRDHAVYCSTKSA 157 chicken
NP_001017619  76 PVDLLVNNAACAKLQPFLDVTPDQFDMSFNINVKAALHVAQIVARGMKArgtGGSIVNVSSQASQCALKDHAVYCATKAA 155 zebrafish
NP_573333     77 LLDGLVNNAGVAIIKPFEELTEQDFDTHFDVNIKAVFNVTQSLLPRLKD---GASIVNVSSIASSRSFGGHTAYSATKAA 153 fruit fly
NP_506182     83 PIHGLVNNAGIATNHAIGQITQQSIDRTFAVNVRGPILIAQLVARNFVDrqiKGSIVNISSQAAIRPLDNHTVYCASKAA 162 nematode
Feature 1                                                                                        
1PR9_A       156 LDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTL 235 human
3D3W_A       156 LDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTL 235 human
1CYD_A       156 MTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGI 235 house mouse
AAH97532     156 LDMVTKVMALELGPKKIRVNSVNPTVVMTEMGRVGWSDPQKSKPMLNRIPLGRFAEVEDVVHSILFLLSDKSSMITGSCL 235 African clawed ...
Q8JIS3       158 LDMLSKVMAMELGPHKIRVNTVNPTVVMTDMGRINWSDPQKSAAMINRIPLGKFAEVDDVVNSILFLLSDKSAMTTGSSL 237 chicken
NP_001017619 156 LDMLTRVMALELGPHQIRVNSVNPTVVMTEMGKIGWSDPEKARSMTSRIPLGKFAEVEDVVNSILFLLSDKSAMTSGVML 235 zebrafish
NP_573333    154 LDSLTKSLALELGPRKIRVNSVNPTVVLTKMGADNWSDPAKSGPLLAHIPLNRFCEVQEVVDATGYLLSSKSSFVNGHHI 233 fruit fly
NP_506182    163 LDMVTRCLANELGSQNIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRMPIKRFAEVDEVVNAVLFLLSDNASMTTGSTL 242 nematode
Feature 1                 
1PR9_A       236 PVEGGFWAC 244 human
3D3W_A       236 PVEGGFWAC 244 human
1CYD_A       236 LVDAGYLAS 244 house mouse
AAH97532     236 PVDGGFLAC 244 African clawed frog
Q8JIS3       238 MVDGGFLVS 246 chicken
NP_001017619 236 PVDGGFLAC 244 zebrafish
NP_573333    234 LLEGGYSVS 242 fruit fly
NP_506182    243 PVDGGFSNN 251 nematode

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