Conserved Protein Domain Family
HTH_55

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pfam18622: HTH_55 
RctB helix turn helix domain
RctB is a highly conserved 75.3 kD protein (658 residues), which is unique to the Vibrionaceae. The first 500 amino acids of RctB are sufficient to mediate oriCII-based replication and its C-terminal 165 residues may mediate regulatory processes. RctB contains at least three DNA binding winged-helix-turn-helix motifs, and mutations within any of these severely compromise biological activity. This entry describes domain 1 located at the N-terminal region of RctB proteins. Mutational analysis show that it binds oriCII DNA, and that this function is critical for the capacity of RctB to mediate oriCII-based replication.
Statistics
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PSSM-Id: 408404
Aligned: 3 rows
Threshold Bit Score: 217.91
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
GAL24475  13 RDHKGGHLFEVTETSVDWIEQYQHFKGVTKSILELLNLISLRGFSSKDGYVSTTELIDATDGKLTRAAIQQRLRAAVNIG 92 
GAD74508  12 RSHKDGHLFEVNKSSADWVQQYQHFKGVTKSILELLNLISLRGFSSKDGLVSTTEIVQSTDGQLTRAALQQRLRTAVSIG 91 
Q5E1M5    18 RDHKGGHLFEIPTNLVDWISQYQHFKGVTKSILELMNLISLKGFSSPDGLVSTTEIIETTDGHLTRAAIQQRLRTAVNIG 97  Aliivibrio fischeri...
GAL24475  93 LFSQHGVKFEEGLAGKTMLHRFVNPNQ 119
GAD74508  92 LFTQTPVRFEEGLAGKTMLHKFVNPSQ 118
Q5E1M5    98 LFEQFPVRFEHGLAGKTMLHKFINPSQ 124 Aliivibrio fischeri ES114
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