Conserved Protein Domain Family
Poty_PP

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pfam08440: Poty_PP 
Potyviridae polyprotein
This domain is found in polyproteins of the viral Potyviridae taxon.
Statistics
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PSSM-Id: 285618
Aligned: 5 rows
Threshold Bit Score: 393.006
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
A0AUJ5 1852 SALMCFAANVPPIFDNVDPALFGQVTRPQVQTAQMFELPIYITTPMISDAGALQSDIYQVIKKFVLREGSIQLTQDATYL 1931 Blackberry virus Y ...
O11436 1502 AAFQCFMYDLPVMTGQVSVSLLSKCTREQARTMAAFELSPFTMSNLVAFDGTMHPAIHDLLKKFKLRDSTVVLRRTALPL 1581 Ryegrass mosaic vir...
P18247 1542 AALACFAYNLPVMTGGVSTSLIGNCTVRQVKTMQQFELSPFFIQNFVAHDGSMHPVIHDILKKYKLRDCMTPLCDQSIPY 1621 Potato virus Y stra...
Q65730 1529 AALLSFAMQVPPVLRNVNLQIFQRITREQVVTAARFEHQLSYMVWMVNKDGSMPTKLYDLFSPLLLSQGNMRLSPYYSSL 1608 Brome streak virus ...
P89201 1930 SALLCFAHGIKPVCDRVDVAAIGTLTRQQALVSGQFELNKLLVAHSATPSGQIPRVVYELFKPLLLRTDAVPICSSYNAI 2009 Sweet potato mild m...
A0AUJ5 1932 SNMSNWKTIADYFPDISDTHAM-RHEKVPFFVKDFGENSYIALAEAIRKARNKSLGArGKLYGDVDATALLLQTDPGSLD 2010 Blackberry virus Y ...
O11436 1582 RASASWYTVREYETIIGDLHIEnKDVRIPFVANDLSNSLLEGLWDAIQCNRSDVSTT-KLTTVSANKIAYTLKTDTSSIQ 1660 Ryegrass mosaic vir...
P18247 1622 RASSTWLSVSEYERLGVALEIP-KQVKIAFHIKEIPPKLHEMLWETVVKYKDVCLFP-SIRASSISKIAYTLRTDLFAIP 1699 Potato virus Y stra...
Q65730 1609 YDSDTFMTVKNYVDIGYLKHDRtTNQRLPFHCHDVSTTFAMKVADRFEDSRAPSTYSiRVPAVNLRHTAVKLSTDPAQVG 1688 Brome streak virus ...
P89201 2010 -AACNWLPLSTYMRR-NEKNEHvLATKIPWYCSDLSEDFNIKLAECVKSCMSTSNARfIVDNVNFITVAHKISVGEKTVG 2087 Sweet potato mild m...
A0AUJ5 2011 RSIMIVETELVAQRSKLEDLNHHVHESTGMFQRYVSHLNHCLRGRY--QTDQIQKNIEVLSNMRSTLVGYRQVVDKVEPE 2088 Blackberry virus Y ...
O11436 1661 RTISIIDDLLAEERKKQEMFTHHLSTTSGGYTFGLNAIAMCIKSRY--AKGYCIENIATLTNVRNQLTEFSGMSEDQYTS 1738 Ryegrass mosaic vir...
P18247 1700 RTLILVERLLEEERVKQSQFRSLIDEGCSS-MFSIVNLTNTLRARY--AKDYTAENIQKLEKVRSQLKEFSNLDGSACEE 1776 Potato virus Y stra...
Q65730 1689 MILVVIGEALVHQKNILEQLKS-TRTQLDNYNSCILVPNWNVRGKLddAINRVERNVSILENQKNSVEKMSVARGYDELK 1767 Brome streak virus ...
P89201 2088 QAKLMVGELLENSKSWRDGLLHVQSSSVTRSLVGLCTSWYQRRAKA--ALDRLDLQVNRLQLLYDQLGQVEITSDYDKLV 2165 Sweet potato mild m...
A0AUJ5 2089 EIphfVQQNPNITMIidfqSDRTKADGFVKHGINGIYNYTKIASD 2133 Blackberry virus Y USA/C3ARK
O11436 1739 EI---IQNYPDLTLV----HHQSKQEIIRNLKLKAKYDQTLIASD 1776 Ryegrass mosaic virus isolate Danish
P18247 1777 NL---IKRYESLQFV----HHQAATSLAKDLKLKGIWNKSLVAKD 1814 Potato virus Y strain N
Q65730 1768 ELl--EENHAVAAHV----MYQKGPQKFID--------------D 1792 Brome streak virus (strain 11-Cal)
P89201 2166 EFf--TENGECAAYL----ESQSKTdflekhvlelrqpaitknvv 2204 Sweet potato mild mottle virus isolate Salazar
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