4FTF


Conserved Protein Domain Family
T2SSS_2

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pfam16549: T2SSS_2 
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Type II secretion system (T2SS) pilotin, S protein
T2S_S is the S protein or pilotin of the bacterial Gram-negative secretion system in Vibrio and some E.coli and Shigella. It is given the suffix _2 to distinguish it from the PulS_OutS family of pilotins from Klebsiella and Dickeya, etc. AspS is functionally equivalent and yet structurally unrelated to the pilotins found in Klebsiella and other bacteria. AspS binds to a specific targeting sequence in the Vibrio-type secretins, enhancing the kinetics of secretin assembly; homologs of AspS are found in all species of Vibrio as well those few strains of Escherichia and Shigella that have acquired a Vibrio-type T2SS. PulS is the Kelbsiella pilotin, found in PulS_OutS, pfam09691. Not all species with a type II secretion system have this pilotin or S protein.
Statistics
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PSSM-Id: 435419
Aligned: 17 rows
Threshold Bit Score: 128.598
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4FTF_A         6 KQRNLELLAGNRASLLSTELPL-EFGPLNILRATAKGSTVELMMVYNTDANNAKPTEQVLQSAVSSFCANKDIRSNLDVG 84  Vibrio cholerae...
WP_021703663  23 EQRQLELIASNRANLIMAELPI-ERGPLTIMRASAKKTTIEIMMIYNQDAPGAKPIKQVLAHSMNSYCTNDSVAANLELG 101 Vibrio
CAV18272      35 KQRQLEMMAHHRAGVLSAGLPI-EYGPLSIMRVLAKNTVVEIMMIYNQDAKGAKPLNQVVDMSVNSYCTNSEVRANLDMG 113
Q87NA2        23 NQRQLELMASNRAGVLSAGLPL-EYGPLQIMRVSSNKNVVEMMMIYNDDALGAKPLNQVLNTSIYTYCNTPSVREQIDMG 101 Vibrio parahaem...
WP_021709133  23 KQRQLELMASNRAGVLSAGLPL-EYGPLKILRVSSRKNAVEMMMIYNDTAKGAKPLKQVLNTSIYSYCKSSEVLEQLDMG 101 Vibrio azureus
GAM62401      27 KQKELELKADRRAGILASSLPI-TYGPLTIAKAQAKGTTVIIEMLYNQS--GNKSAQQLVESAKNYYCSSDDVRASLNEG 103
GAL25696      26 ERRKLELLAQSRASVISSGLPI-EQGPLSIMKASASKGVVEIMMLYNTDAKGALSLDQLLRNSMNYYCTDREVKANLDLG 104
Q5E629        22 QQQEIEMLADYRASVLASVLPL-EMGQLTLLQAKAKQGVVEMMFL--DGGNGEISTNQIIENSITTFCKDKEVRPVLDKG 98  Aliivibrio fisc...
KKA44142      23 QHDQAAEAATQRADMIAQLLPM-DIEGYSLVRARAQDVIIELTLL-E--KNAKKAPGQLFSGLERRYCEDNDIRNMLDSG 98 
KLV11351      22 KDQAVFDLAKSRAMAINSKAPYaKIDQYQIMKAQAREKNVEITILYGGGGKT--PPTMAAQNAAASYCNSSELSPLVSEG 99 
4FTF_A        85 ISYRIQMRNTRGQLMADQLVTKESC 109 Vibrio cholerae 569B
WP_021703663 102 IDYRIKMRSSRGQLMVDQMVNRDTC 126 Vibrio
CAV18272     114 LAYNIKIRNTRGQLMVEKLISKETC 138
Q87NA2       102 LMYRLKVRNSRGQLIADELVSEQTC 126 Vibrio parahaemolyticus
WP_021709133 102 LVYRIKIRNSRGQLMTDELISAQTC 126 Vibrio azureus
GAM62401     104 INYQIKVRNNRGQMVVEDMITAQTC 128
GAL25696     105 LAYRIMIRNTRGQLMIDQMVTQQYC 129
Q5E629        99 VTYRYIIRNSRGQKQNDIIVNEQSC 123 Aliivibrio fischeri ES114
KKA44142      99 ISYTILVRDTRGRQVLKNAIDATGC 123
KLV11351     100 VSYTIVIMDMRGRPMVTQPITAAIC 124
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