5W0P


Conserved Protein Domain Family
Rhodopsin_N

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pfam10413: Rhodopsin_N 
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Amino terminal of the G-protein receptor rhodopsin
Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes, as signalling molecules. They utilize heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. Rhodopsin is a dimeric transmembrane protein and its intradiskal surface consists of this amino terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminus is a compact domain of alpha-helical regions with breaks and bends at proline residues outside the membrane. The transmembrane part of rhodopsin is represented by 7tm_1 (pfam00001). The N-terminal domain is extracellular is and is necessary for successful dimerization and molecular stability.
Statistics
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PSSM-Id: 313611
Aligned: 6 rows
Threshold Bit Score: 73.3344
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5W0P_A       163 GTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQF 197
Q9I9R2        11 GTEGKNFYIPMSNRTGIVRSPFEYPQYYLADPIMF 45  torafugu
Q9W6A5         3 GTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKF 37  zebrafish
P35359         3 GTEGPAFYVPMSNATGVVRSPYEYPQYYLVAPWAY 37  zebrafish
Q9IA36         3 GTEGQDFYVPMSNKTGVVRSPFEYPQYYLAEPWKF 37  zebra finch
XP_005810493  11 GTEGKNFYIPMSNKTGIVRSPYEYQQYYMVDPMIY 45 
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