Conserved Protein Domain Family
PRK14906

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PRK14906: PRK14906 
DNA-directed RNA polymerase subunit beta'
Statistics
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PSSM-Id: 184899
Aligned: 5 rows
Threshold Bit Score: 2680.78
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
302336390    1 MADFDTTDFDAIKISLASADEIRSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPVKDWECACGKYKGIRFKGIVCERC 80  
257790478    2 TTEFDVSNFDALRISLANAEDVRSWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECACGKYKRVRFKGIVCERC 81  
257784971    1 MADFDSTEFDAIKISLASADDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPVRDWECACGKYKGIRFKGITCERC 80  
257064681    1 MTEFDVNNFSALRISLASAEDIRSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECSCGKYKRVRFKGIVCERC 80  
256826829    1 MTEYDVNNFDALRISLASAEDIRSWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECACGKYKRIRFKGIVCERC 80  
302336390   81 GVEVTSAKVRRDRMGHIELAAPVSHIWYFKSPATfPLARLLDMKSKDLEKVLYFASYVITDVDGEAREADADDLKEELAA 160 
257790478   82 GVEVTRSKVRRERMGHIELAAPVSHIWYFKGSPS-RLGYLLDIAPKELEKVLYFASSIITSVDKEAREEDADELRDELAA 160 
257784971   81 GVEVTTAKVRRDRMGHIELAAPVSHIWYFKSPTSfPLARLLDIKSKDLEKVLYFASYVITSVDTEAREADVDDLREELAA 160 
257064681   81 GVEVTRAKVRRERMGHIELAAPVSHIWYFKGSPS-RLGYLLDIPPKELEKVLYFASAIITWVDEEARDEDADDLRDELAA 159 
256826829   81 GVEVTRAKVRRERMGHIELAAPVSHIWYFKGSPS-RLGYLLDIAPKDLEKVLYFASAIVTSVDKEAREEDEADLRDELAA 159 
302336390  161 DLEELDAERDDEIE---RLRAQGESDGDEF----GDIEPLSADEIRAGVADLQEEYEEEKQLRRDAFDRFMQLEKRELIS 233 
257790478  161 DLEELDAERDRLVEatrKLSVDYVPEDDDFvddvDEDERMTAEEVDEEIADIYEEFNERKALRQDAFDAFMKIEPKQLVP 240 
257784971  161 DLEELDAERDDQIA---RLREQGQPQDDEF----GDFEPLSEDEIRAGVADLEEEYEEEKTLRREAFEKFMQLETRELIS 233 
257064681  160 DLEELDAERDRLIEatrRLSVDYVPEDDDFeddiDDDERLTPEEVAEEIADIYEEYNERKELRSEALDAFMRIAPKQLIP 239 
256826829  160 DLDELDAERDRLIAstrRLSTDYTPEDDEFvddiEDEERLTPEEVEDELADIYEEFNERKALRSEAFEAFMKIEPKQLVA 239 
302336390  234 DEALFTEMKRYYSIYFKGGMGAEAVRDLLHGIDLGKEAEELRAIVASdeSQKQKKERAVKRLEIVDSFLKGGNDPANMIL 313 
257790478  241 DEALYREMRLNYRDYFTGGMGAESVRDLLDAMDLAATADELRDVIAN--GKGQKRAKAIKRLKVVDAFLKSENKPTDMIL 318 
257784971  234 DEGLFSELKRYYGIYFKGGMGAEAVRDLLSNIDLEKEAKELRAIIANedAQKQKREKAIKRLEIVDAFLKGGNDPANMIL 313 
257064681  240 DEALYREIRLNYSDYFHGGMGAEAVRELLEAIDLEKVSEELKEIVET--GKGQKRLKAVKRLKVVDAFLKSDNSPADMIL 317 
256826829  240 DETLYREMRLNYSEYFKGGMGAEAVRDLLDDIDLDEVAEELSEIIAT--GKGQKRAKAVKRLKVVDAFLKSENKPHDMIL 317 
302336390  314 DVVPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDLDAPAIIVNNEKRMLQESVDALFDNGRRGRPVTGR 393 
257790478  319 DVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGP 398 
257784971  314 DVVPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDLEAPSIIVNNEKRMLQESVDALFDNGRRGRPVTGR 393 
257064681  318 DVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGP 397 
256826829  318 DVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQRLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGP 397 
302336390  394 GGRPLKSLAESLKGKQGRFRQNLLGKRVDYSGRSVIVVDPHLKLHQCGLPSTMALELFKPFVMRRLVELGKVENIKGAKR 473 
257790478  399 GNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPSQMALELFKPFVMKRLVELEYAANIKAAKR 478 
257784971  394 GGRPLKSLAEALKGKQGRFRQNLLGKRVDYSGRSVIVVDPHLKLHQCGLPSAMALELFKPFVMRRLVELRKVENIKGAKR 473 
257064681  398 GNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPQQMALELFKPFVMKRLVELEYAANIKAAKR 477 
256826829  398 GNRALKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPSAMALELFKPFVMKRLVELEYAANIKAAKR 477 
302336390  474 AIDRSAPAVWDVLDEVIKGRLVLLNRAPTLHRLSIQAFEPVLVEGKAIHLHPLVCAPFNADFDGDQMSVHVPLSTQAQTE 553 
257790478  479 AVDRGASYVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHVPLGAEAQAE 558 
257784971  474 AIDRGTPVVWDILDEVIQDRLVLLNRAPTLHRLSIQAFEPVLIEGKAIHLHPLVCAPFNADFDGDQMSVHVPLSTQAQTE 553 
257064681  478 AVDRGASYVWDVLEEVIQDHPVLLNRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHVPLGNEAQAE 557 
256826829  478 AVDRGASYVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPVLTNGKAIKLHPLVCTAFNADFDGDQMAVHVPLSSAAQAE 557 
302336390  554 ARVLMLSSNNLRSPASGKVLTVPSQDMIFGVYFLTTEKDGVEGEGRVFSDFEDALMAYDARNQVDIQARVLVRVSsadan 633 
257790478  559 ARVLMLSANNIKSPAHGRPLTVPTQDMIIGLYYLTAARDGFEGEGRSFIDFDDAMNAYDARAELDLQAKIWVRLT----- 633 
257784971  554 ARILMLSSNNLRSPASGKVLTVPSQDMVFGVYYLTSEKTGADAKTLTFASFEDALLAIEANRDLDLQAKVVVRVStkdan 633 
257064681  558 ARVLMLSSNNIKSPAHGRPLTIPTQDMVIGMYYLTTPRDGFPGEGRTFIDFDDALNAYDAHADVDLQAKINVRLS----- 632 
256826829  558 ARVLMLSSNNIKSPAHGRPLTIPTQDMIIGLYYLTTIRDGFAGEGRVFASFDDVQHAYDAHADLDLQARISVRLP----- 632 
302336390  634 ceeggrkifRTYSARGEAKDYDVTDHAVRFETTVGRVIFNrQCLPADYPYMNYKMVKGDVSALVNDCCDRYSTAEVEPIL 713 
257790478  634 ---------KDTQVATAFGVFEEHKAGERIETTIGRITFN-NVLPEDYPYLNYEMNKKEISRLVEDVCNRYELSSVPAIL 703 
257784971  634 vadsgraifRVMTGRGQYEDLNVTEGTKRFETTVGRIIFNrQCLPEDYPYINYKMVKSDIGILVNDCCDRYPMADVEPIL 713 
257064681  633 ---------RDVKVANSFDELEEHKAGERIQTTIGRIIFN-SVLPEDYPFVNFVVDKKQIGRLIEDCCNRYSLSEMTPIL 702 
256826829  633 ---------RDMTVVSSYGQAKECKAGERIETSAGRVIIN-DVLPDDYPFLNYELDKTEVGRLISDCSNRYSTAAMEPIL 702 
302336390  714 DAIKHSGFHYATRAGLTISVWDAAIPDDKPALLEDAQAKVDQINEYYEDGFLSERERHAEVINAWTECTDTLGSKMLDGF 793 
257790478  704 DGLKDAGFHYATRAGVTVSVYDATVPPNKAEILAAADEKVAAIDEDYEMGLMSPDERHKQVVDIWNAANEEVGEAMAENF 783 
257784971  714 DNIKKTGFHYATLAGLTVSVWDAVIPEHKPQLLQEAQDRVDQINEYYEDGFLSERERHVEVVNAWTECTDLLGSEMLAGF 793 
257064681  703 DGIKNLGFHYATRAGITVSVYDATIPPEKESILAEADKKVAAIDEDYEWGILNEDDRHQQVVDIWNEANEAVGEAMDKNF 782 
256826829  703 DGLKSNGFHYATKAGLTVSIYDATIPDDKDEILAAADEKVAAIDGDYEMGLMSDEERHKQVVDIWTDATEEVGEAMASHF 782 
302336390  794 DEDNPIYMMADSGARGSKTQLRQLAGMRGLMADMSGDTIDLPIKSNFREGLEPLEYFISTYGARKGLVDTASHTSDSGYL 873 
257790478  784 DKFNPIYMMAFSGARGNIKQIRQLAGMRGLMSDPKGEIIDRPIKANFREGLSVLEYFISTHGARKGLADTALRTADSGYL 863 
257784971  794 AEDNPIYMMADSGARGSKTQLRQLAGMRGLMADMSGETIDLPIKANFREGLEPLEYFISTYGARKGLVDTASHTSDSGYL 873 
257064681  783 DRNNPIYMMATSGARGNIKQIRQLAGMRGLMADPKGEIIDRPIKANFREGLSVLEYFISTHGARKGLTDTALRTADSGYL 862 
256826829  783 SGQNPIYMMATSGARGNIKQIRQLAGMRGLMADTKGEIIDTPIKANFREGMSVLEYFLSSHGARKGLADTALRTADSGYL 862 
302336390  874 TRRLVDVAQDVIVREEDCGTDEGVTYDLVKPgETDVDTDLIGRCILDDVVDPEtGEVLFSKNDYISSKEDLSRLVDAGFK 953 
257790478  864 TRRLVDVAQDVIIREIDCGTADGVPYPLHNE-KGDVDENLIGRCLLNDVAGVD-GEVLLAAGEYITHMDQLKAMDAAGVE 941 
257784971  874 TRRLVDVAQDVIVREEDCGTDEAVTYPLIKPgQTSVDTDLIGRCTLEDVCDPNtGEVLIPAGGYVESKQDLERLVEHGLT 953 
257064681  863 TRRLVDVAQDVIVREIDCGSTEGVPYPLFNE-KGDIDGNLIGRCMNE-------GAGHLAAGDYIASMDDLKQLVEAGVT 934 
256826829  863 TRRLVDVSQDVIVRELDCGTTEGVTYALVDS-KGELDENLVGRCLSEDVSDAS-GTRLASAGDYINSMDELTAWQQAGVE 940 
302336390  954 KIELRALLTCKSKYGVCQKCYGWDLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGaDDITQGLPTVARMFD 1033
257790478  942 TLVIRTVMTCHAEHGVCQKCYGWDLATSRPVNIGTAVGIIAAQSIGEPGTQLTMRTFHTGGVAG-EDITHGLPRVQELFE 1020
257784971  954 KVQLRALLTCKSKYGVCQKCYGWDLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGaDDITQGLPTVARMFD 1033
257064681  935 EVNIRTVMTCHAERGVCQKCYGWDLANGRPVNIGTAVGIIAAQSIGEPGTQLTMRTFHAGGVAG-DDITHGLPRVTELFE 1013
256826829  941 EVTIRTIMTCHAEHGVCQKCYGWDLATARPVNIGTAVGIIAAQSIGEPGTQLTMRTFHSGGVAG-DDITQGLPRVVELFE 1019
302336390 1034 VVGNVNEKIlgreadLAPYSGILSITPEQTEYLLRILDADDRSRilvEWRVPASVRFMPGFEDGAEVRAGDQITRGFVNF 1113
257790478 1021 ARKPKGLAV------LAEISGTLQISGDKQSKTITIHDQQGNFR---EYVVSARAQMLPGVTDGCEVKVGQQLTKGSVNP 1091
257784971 1034 VVGNVNEKIlgreadLAPVSGVLHITPETTEYLLRIVDADDASRvieEWRVPASVRFMPGIEDGVVVRAGDQITRGFVNF 1113
257064681 1014 ARKPKGLAV------LAEIAGTLQVTGDKNTKTLTIHDQEGNVR---EYVVSARTQLQAGVRDGNQVKVGQQLTKGSVNP 1084
256826829 1020 ARKPKGQAV------LAEIAGTLQISGDKQTKTITIHDQEGNYR---EYVTSARVQMMPGVVDGSEVTVGQQITRGSVNP 1090
302336390 1114 RKLRGLTDIESTMHTFVKSVKDVYTSQGVDLNDKHIEVIARQMLRRVQVTNPGDSTYLLGQYVDRYAFADTVRNITMAGG 1193
257790478 1092 HDLLRLTDPNTTLRYIVSQVQGVYVSQGVDINDKHIEVIARQMLRKVAVMDAGESDFLPGRQVNRFEFEDAANALIAEGK 1171
257784971 1114 RMLRRLTDIESTMHTFVESVKDVYTSQGVELNDKHIEVIARQMLRRVQVTNPGDSSYLLGQYVDRYVFAETVQNIALAGG 1193
257064681 1085 HDLLRLTDPNTTLRYIVSQVQDVYVSQGVDINDKHIEVIARQMLRKVAVMSAGDSLLLPGRQVNRYEFERIANELIAEGK 1164
256826829 1091 HDLLRLTDPNTTLRYIVGQVQDVYVSQGVDINDKHIEVIARQMLRKVAVLDSGDSDYLPGRQVNRYEFEDVANQLVLEGK 1170
302336390 1194 QAPEAEPVILGTLKVASSIDSWLSSASFIRTAGVLTESAIKGEVDHLIDLKSNVIVGKKIPAGTGLKAYSDVKLTYHGQK 1273
257790478 1172 EPPVGQPLLLGITKASLATDSFLSAASFQETTKVLTDAAIEGKIDHLAGLKENVIIGKPIPAGTGLSRYREVGLTYKGRP 1251
257784971 1194 TPPEAEPAILGTLKVASSIDSWLSSASFIRTAGVLTSAAIEGDVDHLLDLKSNVIVGKQIPAGTGLSAYNDVELTYHGTK 1273
257064681 1165 EPPVGQPLLLGITKASLATDSFLSAASFQETTKVLTDAAIEGKTDTLAGLKENVIIGKPIPAGTGLPRYHKVGLTYHGQP 1244
256826829 1171 QPPVGQPLLLGITKASLATDSWMSAASFQETTKVLTDAAIESKTDQLVGLKENVIIGKPIPAGTGLKRYRNVGLTYKGHA 1250
302336390 1274 IDGPTSplaKSLPEWAPESLKGVEEQLPKQLDWI--GDDY-GYGGVYSKN---------GRTLSSEDAKLYLFDDLGVSQ 1341
257790478 1252 VSPVVG---ETLPDFAPEALRDIEELLPQPQDWSldGDGYlNMGTNYGSYysglslghrGPQLSDEDARLYIYDDLGVSQ 1328
257784971 1274 IDGPTSslaKSLPDWAPAELKDIEEQLPKQLDWV--NEDY--NGGVYSKN---------GRTLSSEDAKLYLFDDLGVSQ 1340
257064681 1245 VSGIDN---ESLPDVAPSELREIEELLPQPQDWSl-DDTYaGYSNMYGTNsyr---glrGQKLSDEDARLYLYDDLGVSQ 1317
256826829 1251 VHEITS---DTLPDYAPEALRKVEELLPQPQDWSldGDSYlNMGGSYSSYfnsl-sagrNSQLSDEDARLYIYDDLGVSQ 1326
302336390 1342 RWTNKFSEVGIETVGDLIGKTEDDLLRIDGIGAKAIEELRDGLEARNLLYILEpDDDEADSEDLSQLLNMVFSPdaDSDI 1421
257790478 1329 RWANKFSEAGIETVADLVGHTEEDLLRIEGIGVKAIEELKEGLEAHDLTHVIE-DDLAATSDDMSQLLDMVFSP--DDTI 1405
257784971 1341 RWTNKFSEVGIETVGDLIGKTEEDLLRIDGIGAKAIEELRDGLEARNLLYILEpEEDEADSEDLSQLLNMVFSPegDGGL 1420
257064681 1318 RWANKFSEAGIETVGDLVGYTEDELLRIEGIGAKALEELKAGLQDHGLESLLE-DDLTATNDEMSQLLDMVFSP--DDTV 1394
256826829 1327 RWANKFSEAGIETVGDLIGYSEEDLLRIEGIGAKAIEELKEGLEKHDLLHIIE-DDLNATGDDMSQLLDMVFSP--DDTI 1403
302336390 1422 MLGTAAPAKHNFDDELIGGSSegdGDSSVINEDLGSLHDLLSQV-------------EKGPDEGDAEE 1476
257790478 1406 LIGGDEPPTFNTEGEDMLGEA---LPPRSYQRNLEELDALLGSVgslgfglttkeseEASNADDDVEE 1470
257784971 1421 MLGSAAPSAHPDYTETLIGSSsdeVSPDVINEDLGSLDDLLNQV-------------VRMDAEAGDDE 1475
257064681 1395 LIGGDAPATFNTDGEEMLGEA---LPPRSYHRDLSELDALLGGLgdfgfgetsasaeADDEEEDEEED 1459
256826829 1404 LIGGDVPATFNTEGEDMLGEA---LPPRSYQRNLEELDAILGNVgdln-----lhidESSTDDSENEE 1463
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