Conserved Protein Domain Family
serpin_mollusks

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cd19602: serpin_mollusks 
serpin family proteins from mollusks
This group includes a variety of serpins from mollusks (freshwater snail, sea slug, and disk abalone). SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.
Statistics
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PSSM-Id: 381066
Aligned: 11 rows
Threshold Bit Score: 502.252
Created: 28-Jun-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
reactive center
Feature 1:reactive center loop (RCL)
Evidence:
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
XP_013080132  20 QQQLSLSSASADFSQRLYQNV-ALDKSNMIYSPYSIHSALSMTSLGARGDTAAEMATTLGTTslg---dsVHLTYKELIE 95  Biomphalaria gl...
XP_005091456 123 GLVYRLSNASTPFALSLFAKLhPQLMTNAVFSPLSVHTAMTMTSIGARGRTQREMFRSLGLRrarlrrrrEHRAYHALLT 202 California sea ...
XP_012937990  22 AGDLDLVRKEVKFSQSLFSKI-SGVTPSLVYSPYSIHSVISLTCAGARGATQGAMRRTLGLKdge--lqtFHNAYRRWNS 98  California sea ...
XP_013077878  78 SPEERIGVANSHVALNVFTSLyPSINSNTIFSPHSLHTALAMTMLGAKKDTKKEFYISLGLKaakvgkseVHGIYKKLLQ 157 Biomphalaria gl...
AKB08731     158 RFITALVGAQNSFTVNLHREI-GQPVTDVVYSPFSIHQALTMTYMGANGDTANEMKRTLALQglg---rrTARAAKKLNE 233 disc abalone
XP_012939189  26 TRVSPLISGETTFSQNLYGKL-RQSHDNLIYSPYSIHSVLSMTLAGARGETAQAMRDTLEMTgve--tgsLHDSYRLWNG 102 California sea ...
XP_013069317  38 EDDKALISTLSEFSQRLYYVI-GRKEANIVFSPHSVHSLLTLASKGAREPTAEVMKEALGITslg---dsVHSTYQDISR 113 Biomphalaria gl...
XP_013069349  31 NQQLALSTACSDFSQKLYQKI-SVREFNSVYSPYSIHSALTMTSLGARGNTATELGRTLSIIslg---dsVHTIYKELIQ 106 Biomphalaria gl...
XP_013084059  19 QEQLSLSAASSSFSQNLYQKL-SAKESTIVYSPFSIHLALTMMLLGAREDTATEMETTLGISslg---dsVHTVYKELIQ 94  Biomphalaria gl...
XP_013061763  44 TEIHKLTSAVSMFSNDLYRTL-AVNAVNIVYSPFSIHTALSMAYLGAREETELSMQTTLRLSkfi--sleSHFVAFDLIN 120 Biomphalaria gl...
XP_005096421 141 NILHSLSTSVDTFSLDMYQEMaSRSQDNFVFSPFGVYSAMTMVKLGASGRTNRQLAARLHMSr------gVHQAMGLYLS 214 California sea ...
Feature 1                                                                                        
XP_013080132  96 QMnsv--qeVQLHTGNAIFVNPYFQIAPKFIEDTSNdyfaRIANIDLtANGGPEKPINDYIAAQTENMIKDVLQPGSIDg 173 Biomphalaria gl...
XP_005091456 203 SLsyt-hrdVHVSSANAVFVKPNIPLEDAFRQQVQQm---YLAKFDTfSLRNPEQAINNWVANATGGKIRDLIAPGSIGr 278 California sea ...
XP_012937990  99 ELtsd--tmVKVHVANGLFVKPGLPIEPSFHDLATSqyqaVSRNLDLsAQGGPEVPINTWVAEKTSDMIQNLLPPGTVNd 176 California sea ...
XP_013077878 158 SLssr--pdIILSYANSVYVKSGLELKKKFRTGLTThyhaKVDNFNMtDPEGPERSINAWVANATRGKISDILKKGDVNi 235 Biomphalaria gl...
AKB08731     234 VIrhs--gnATLKTANGIYVKAGLSIVDDFSDRLDVfyqaNISLFDWeHPDGPEGPINEWVSAETNNLIPDLLAPDTITd 311 disc abalone
XP_012939189 103 RLega--wgAEVDVANGIFVRPGKTLVPSFHDLATSqyqaVSMNLDLsAGGGPEVAINSWVSEKTRGQIQNLLPPGTLDa 180 California sea ...
XP_013069317 114 EVryp--dsVQLGLGNGIFVKPGFTIDENFDQDAQSyyaaAVENINLgYPGGPEIPINEYIAMETQNNIQDLLSQGTINd 191 Biomphalaria gl...
XP_013069349 107 QIngi--rdVQTYTANAIFLNPKFQTAPSFIQDTLNyysvRTDSINFsAAGGPEKPINDYIASKTNNIIVNTLAQGTVTp 184 Biomphalaria gl...
XP_013084059  95 QLtyv--nrIKIHIGNSLYVSSDYQISPKFIEDSTNdysaKTSSIDFsANGGAETLINDYIAAQTENRIQHFLQTETQSr 172 Biomphalaria gl...
XP_013061763 121 DVtqm--dtVQVYVANGMWLNASFKVFQDYQEVTSVlynaVSQNIDFtSPDGPETPINSWVANQTRNQITSFLLPNTISl 198 Biomphalaria gl...
XP_005096421 215 SLpqegdgnSTLSLANAIFVRPGFTYNPAYANRLRMf--yNTTGQEI-EAVDPEDSINAWVESETQGEISEFLEPGSIDa 291 California sea ...
Feature 1                                                                                        
XP_013080132 174 sTVMILVNTIFFNGTWEVTFEKfkTRSQDFKQLa-GAVKQVDMMNDERs-IKIKRDnanGVDVAELPFRGgRFSLYIALP 251 Biomphalaria gl...
XP_005091456 279 sTSMVLVNAIYLNASWAYPFDRrrTSLQEFQPAn-SAPRNMQMMSNTQv-YRYASRq--NMEVVELPYKGdRLAMYIMLP 354 California sea ...
XP_012937990 177 lTALVLVNTIFFNGSWTFPFSQykTKDADFTLPd-HSVATVKMMNAKNd-LLYKSDstlRAHVVDLPFHGgNFSMTVVLP 254 California sea ...
XP_013077878 236 nTAMIIINAVYLNASWAIQFQTfnTKPKPFYSLn-SGVQTIPTMHIVQf-YNYANHh--DTEVIELNFNGsQLAMYILLP 311 Biomphalaria gl...
AKB08731     312 lTALILVNAIYFKATWKTPFPLhlTTQQMFRKSr-TEQVPVQMMQVEGm-FKVGTVpgqAARILELPYEDdRFSMLVLLP 389 disc abalone
XP_012939189 181 sTDLVLVNAIFFNGSWADHFHVseTQEADFTRTd-NSVRTVRMMHRLGh-LAYRSHpalQADVVDIPFSG-SFSLSVVLP 257 California sea ...
XP_013069317 192 nTRMLLVSVLLFRGSWKQQFDReeTVQQTFHTDi-SATKVLDMMHDARt-MRIKRDddnQVDVGELCFEGdTYCLYIAIP 269 Biomphalaria gl...
XP_013069349 185 aTAMLLINTIFFNGTWETSFKEtlTKKKDFRQSi-STVKIVDMMLDNDrtLNIKRDnaiGVDVAEFPFKGgRFSFYIALP 263 Biomphalaria gl...
XP_013084059 173 dTILVLVNTVLFRGAWQNVFSRssTKKQDFKQAs-GAVIQVNMMHNTEknILFKRDvahGVDVVVLPFQGkRFCLYIVLP 251 Biomphalaria gl...
XP_013061763 199 dTRLILINTFYFNGTWKSPFDGafTKKDTFTLSngSQIETDFMMQTEE--YGVKFStveGIDVIRIPFKKnRFAFYIALP 276 Biomphalaria gl...
XP_005096421 292 sTVIMLVNAIYFRGLWQTPFDAdyTSPTTFHVSd-SETAIVDMMSHTGr-YTIRRSavlGADVLELPYAGdRFVMYLLRP 369 California sea ...
Feature 1                                                                                        
XP_013080132 252 QKvDGITDL--EKLLAQPNkv----ndLFTGLNYVRVQLAIPKFKTETTL-SLNKPLKDMGMVKAFSPMAADFTGItq-- 322 Biomphalaria gl...
XP_005091456 355 HNsSSIAELm-EFVTGSEDpgqnplevLLSDLTPESVKVVLPKFNIESEVlDLSQDLQEMGIVKAFNRRRANFSGIsv-- 431 California sea ...
XP_012937990 255 HAgTSLATL--EGNLTSQDgat---ltLLEGLHTREVDLYLPKFRIESGF-SLKKALTDLGMGLAFDKDNANFTGIvr-- 326 California sea ...
XP_013077878 312 SAkSNLNQLl-QNMKASSAlanp-fdeLLTGLERRNLNLSLPTFKIQSDViDLVPALKNLGLKKAFNSSQADFKGIak-- 387 Biomphalaria gl...
AKB08731     390 DDvDNLPAL--ENSLSADIlt-----sRLDTAVASTIKVFLPRFKLETSV-SVKESLQNMGMTKPFMEGTADFTGIvs-- 459 disc abalone
XP_012939189 258 HAgSSLATL--ETAVTSQDgat---ltLLQGLQTRKVDLFLPRFQIEAEF-SLKHVLTELGMGVAFSNMADFSGIVeg-- 329 California sea ...
XP_013069317 270 QRiVTFMSL--ENSLAQPNrv----ssLFEGLNDVYVELVVPKFKIETQL-NLKSALTELGFGDIFDEDSADFSGIgs-- 340 Biomphalaria gl...
XP_013069349 264 QSaEAITEL--EMLLPLPGkt----sqLFVGLTPVRAKVEIPKFKIETSL-KLKKTLVELGISDAFNPARADFTGItl-- 334 Biomphalaria gl...
XP_013084059 252 HKlDGITDL--EYLLAQPSkv----egLFSGLSLHLVDLAIPKFRTETAL-TLKTPLQEMGMVKAFSRLEANFTGLshne 324 Biomphalaria gl...
XP_013061763 277 RSvSGLNDF--EQKLMKESfdi---nhLFTDLEKTYVNLKMPKFKLTASI-HLTRSLKDLGMAIAFGPKANFSGISd--- 347 Biomphalaria gl...
XP_005096421 370 AP-GTALDLviSRLSPQTWne-----tINGDVSTSRCTVKVPKFALDTSQ-SMKEILQSLGITRAFDPAAAKFRTMtr-- 440 California sea ...
Feature 1                                    ##############         ############                 
XP_013080132 323 --------saQVYISQVLHKAMIEVQETGTVAAAATVIGIVMesa---iiiSPPQETFIADHPFVYFLRDNVSGEILFQG 391 Biomphalaria gl...
XP_005091456 432 ---------tPLYIDKVVHKAVIEVTESGTTASAATAVYLARns------fLRHTTEVKVNRPFMFLIKDKLMNAVLFMG 496 California sea ...
XP_012937990 327 --------dvPTYISDVFHKAVIEVNERGTTASAATAMVMSKmsl---ridPDGPVVVRADRPFLFFLRDVRNGGILFQG 395 California sea ...
XP_013077878 388 ---------qKLFLDKVIQKAVISVNETGCEAAAATDVIFGLks-----srPTPALEVKVDRPFLYVIRSKAQKVVLFMG 453 Biomphalaria gl...
AKB08731     460 --------tgQLYISDVIHKAVVDVNEIGSEAAGATAVIISFqt-----asLHSPPEIRCDHPFLFIIRDNVSKANLFIG 526 disc abalone
XP_012939189 330 ---------gGIKISDVVHKAVIEVTEQGSTASAATAVAMVRfsavevlgpEEEPVVFRADRPFLFLLRDLNNGGILFQG 400 California sea ...
XP_013069317 341 ---------sDLYIHDVIHKAVFEVTEDGTFGTAATVADGSGksl----stSPPLERFIVDRPFIYFLRNKNTGHILLQG 407 Biomphalaria gl...
XP_013069349 335 --------sgQLSFDEVIHKAVIDVRETGTVAAAATVISSLKsl------pLPPTASFIANHPFVYFLRDKVTGQILFQG 400 Biomphalaria gl...
XP_013084059 325 nlrnsyfitaQVHIGQVLHRAVIDLQEMGNMASTTSFVAVVGegkd--qlyKPKTASFIADHPFVYFLRDNVTGQILFQG 402 Biomphalaria gl...
XP_013061763 348 ---------qDLFISDVVQKATIEVQEAGVTASAASGVLLKDva------fFESSVDFYVDHPFMFFLRDDDIELILVAG 412 Biomphalaria gl...
XP_005096421 441 --------arDVYINEVEHRSVIELDEEGTVAAAATGVQIAT---------LSLPPEFILDRPFMFLLRDKVQGINLFAG 503 California sea ...
Feature 1            
XP_013080132 392 KFSG 395 Biomphalaria glabrata
XP_005091456 497 AFLG 500 California sea hare
XP_012937990 396 KFSG 399 California sea hare
XP_013077878 454 TFVG 457 Biomphalaria glabrata
AKB08731     527 KFSG 530 disc abalone
XP_012939189 401 KFSG 404 California sea hare
XP_013069317 408 KFSG 411 Biomphalaria glabrata
XP_013069349 401 KFSG 404 Biomphalaria glabrata
XP_013084059 403 KFSG 406 Biomphalaria glabrata
XP_013061763 413 KLTV 416 Biomphalaria glabrata
XP_005096421 504 RYAN 507 California sea hare

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