6NEF,6EF8


Conserved Protein Domain Family
OmcS-like

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cd21555: OmcS-like 
C-type cytochrome OmcS and similar proteins
This family includes C-type outer membrane cytochrome S (OmcS) which plays an important role in extracellular electron transfer. OmcS can transfer electrons to insoluble Fe(3+) oxides as well as other extracellular electron acceptors, including Mn(4+) oxide and humic substances. Recent studies show that Geobacter sulfurreducens hexaheme cytochrome OmcS proteins can assemble into filaments, known as microbial nanowires, similar to type IV pili composed of PilA protein. The coordination of a histidine in one subunit with the iron in the heme of an adjacent subunit is an important stabilizing element. The capacity of these bacteria to transport electrons to remote electron acceptors via these protein nanowires is of interest because of the environmental and practical significance of these microbes in soil.
Statistics
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PSSM-Id: 411073
Aligned: 88 rows
Threshold Bit Score: 295.389
Created: 23-Dec-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heme bindingCXXCH
Conserved site includes 62 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:6NEF: Geobacter sulfurreducens C-type cytochrome OmcS binds 6 hemes per molecule; contacts at 4.0A
  • Structure:6EF8: Geobacter sulfurreducens C-type cytochrome OmcS polymer binds hemes; contacts at 4.0A
  • Comment:G. sulfurreducens nanowires are assembled by micrometer-long polymerization of the hexaheme cytochrome OmcS, with hemes packed within ~3.5-6A of each other

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ###  ####  ##                             #  ### ##          # #                
6NEF_A         1 FHSGGVAECEGCHTMHNSlggavmnsataqfttgpmllqgaTQSSSCLNCHQhagdtgpsSYHISTAeadmpagtaplQM 80  Geobacter sulfu...
RME20128      22 FHDEGVAHCNGCHTMHNSengtlvdpdsp--ngnpwllkdaTPSDVCLGCHAangg-tghLGNVLSDdpl-----apdPE 93  candidate divis...
PJA73706      21 FHDGGVAHCNGCHTMHNSqngqlvdpdsp--ngnpwllvdaTPSDVCIACHDh-------LDKPLGAdpl-----appAM 86  bacterium CG_4_...
KAA3632789    22 FHDAGVADCAGCHTMHNSqdgtlvdpdsp--dgnpwllvdaNPSDVCLSCHAs------rLGEVFGTdpl-----appRL 88  Calditrichaeota...
WP_156049117  22 FHDEGVARCAGCHTMHNSqnnalvdpnsp--ngnpwllkdaTPSDVCLSCHAv------tHGNEFTGtpl-----nppAQ 88  candidate divis...
TFH64014      24 FHDEGVARCSGCHTMHNSqngvpvdtlhp--sgngyllirsTPSDVCLTCHGdsr--gleFPSVTYTpta------ppPQ 93  candidate divis...
RJP77759      26 FHDEGVAYCGGCHTMHNSqngqlvdpnsp--ggnawllkdeTPSDVCLSCHSqtsatsnrGRDVLSLdpl-----vpnNE 98  candidate divis...
RJP72871      53 AQRCAVTQCNACHTAHNSqdgsvidvdsl--sgnpnlladaAPSDICLDCHS--------RYGQLSSng--------qTL 114 Candidatus Abys...
PKK85082      22 FHDAGVAYCAGCHTMHNSkdgalvdpdsp--ngndwllkdaTPSDVCLSCHAt------sRGAVFTAdpl-----appTT 88  candidate divis...
RMF74431      26 FHDGGVAHCNGCHTMHAGpsnpadnpn-----gnefllkesTPTDTCLRCHDd------rLGNVFGGgdsdd-plnpgTL 93  Acidobacteria b...
Feature 1        ###  #                             ## ###          #  # ###      # #    # ### ##
6NEF_A        81 TPGGDFGWVkktytwn----------vrglntsEGERKGHNIVAgDYNYVADTTLTTAPGGt---YPANQLHCSSCHDPH 147 Geobacter sulfu...
RME20128      94 KGGGNFVFLlednlndg--------hngalnpiGGDAAGHNLNApGYGLAPDATLSSSPGGn---FPASQLGCSSCHDPH 162 candidate divis...
PJA73706      87 KGAGNFVFLlednlndg--------hggasnpiGGDAAGHNLNApGHGLQADETLTTSPGGs---FPASAMGCTSCHDPH 155 bacterium CG_4_...
KAA3632789    89 IGAGNFAFLlednindghgggdtladgswenaiPGAQGGHSIIApSMGVGADPVLTAAPGGt---FPASQLGCSSCHDPH 165 Calditrichaeota...
WP_156049117  89 TAAGSFIFLtatnlne-----------grsgsyPGYAAGHSIVApGYALAADGAVLSAPGGgagaFPSASLGCSSCHDPH 157 candidate divis...
TFH64014      94 TGAGSFIFLlednlyd-----------ghsgttPGSAAGHNLNApSRGVSTDGTLLTAPGGt---YPSSAMGCSSCHDPH 159 candidate divis...
RJP77759      99 CGAGDFVFQlednindgh------nggnpsywiPGHKSGHSINApSKGLAVDPVLTTAPGGn---FPSSILGCSSCHDPH 169 candidate divis...
RJP72871     115 TPGGDFFWTtrdvaftd--------asgtqqriDGREHGHNLHSpGHGLTADDVLTVAPGGt---FDSSRLGCHSCHDPH 183 Candidatus Abys...
PKK85082      89 KGGGNFVFLlednlndg--------hggatnpiNGDAAGHNLNApSKGVAGDGTLLSSPGGa---FPSSELGCSSCHDPH 157 candidate divis...
RMF74431      94 YGGGQFVFLlednindg--------hngasnpiLGEKAGHSIISeDKGLAADSVNSTAPGGt---YLSSYLHCTSCHDPH 162 Acidobacteria b...
Feature 1                                              ##                                        
6NEF_A       148 GkyrrfvdgsiattglpiknsgsyqnsndptawgaVGAYRILGGtgyqpksls------gsyafanqvPAAVAPSTYNRT 221 Geobacter sulfu...
RME20128     163 G----------------------------------NTNFRLLHGagddvq-------------dglytFTNPAPDAEGIS 195 candidate divis...
PJA73706     156 G----------------------------------TSDFRFLYGagrvvq-------------ggianFTNPAPDAEGLA 188 bacterium CG_4_...
KAA3632789   166 G----------------------------------NTNFRMLYGatsvq--------------dglytFTNAAPTAEGGP 197 Calditrichaeota...
WP_156049117 158 G----------------------------------NMNFRMLYGigaiq--------------dglftFTNAAPIAEGVS 189 candidate divis...
TFH64014     160 G----------------------------------NTSFRLLYGigpvt--------------aggatFTNAAPVAEGTS 191 candidate divis...
RJP77759     170 G----------------------------------NESFRLLNGahevq--------------agafdFVSPAPNVLGIG 201 candidate divis...
RJP72871     184 G----------------------------------NANFRFLYGagetasd-----------ypggytFAFPAPIAEGYP 218 Candidatus Abys...
PKK85082     158 G----------------------------------NTNFRLLYGagsiq--------------dglftFTNAAPDAEGLS 189 candidate divis...
RMF74431     163 Gq---------------------------------GGHFRLLYGndgnpnvdstsqaagypydysaapPDAVGIPVFGGG 209 Acidobacteria b...
Feature 1                          #    # ##  ##  ##         #                                   
6NEF_A       222 Eat---------tqTRVAYGQGMSEWCANCHTDIHNsayptnlrHPAGNgakfgatiaglYNSYKKSGDLTgt-qaSAYL 291 Geobacter sulfu...
RME20128     196 Iffgs-----eandNHTAYRGGMSAWCGNCHGNFHAnnt--qlvHPSGVamgae--hstiYNLYNGTADQTggtqaTAYL 266 candidate divis...
PJA73706     189 Vffgs-----esqtSHTAYKGGMSAWCGNCHGDFHAngt--kliHPSGItlggt--iaqtYNQYNGTEDQTgglaaSAYL 259 bacterium CG_4_...
KAA3632789   198 Slffgg---gesqtLHTGYQGGMSAWCGNCHGDFHNnnt--kliHPSGStiggs--iatnYNLYNGTDAITggvaaSAYL 270 Calditrichaeota...
WP_156049117 190 Yndtv------sntIHTAYHSGMSAWCGNCHGDFHNnnt--kliHPSGRalggt--iagiYNRYNGTGDQNgavqaTSFL 259 candidate divis...
TFH64014     192 Ysaae------tnvLHTAYKSGMSAWCANCHGNFHAeagg-rleHKSGQsiggt--iagiYGRYNGTAHYNtgtpaTSYL 262 candidate divis...
RJP77759     202 Vgtgaa----esptNHNAYLDGYSDWCANCHGNYHSsaq---lkHPSGEpiggs--iaqiYNLYNGTGDQLggtqaTGYL 272 candidate divis...
RJP72871     219 LgsgqsgmgaettgQHTAYISGMSDWCANCHEGIHSkmss-amlHPVDEsigse--isgsYNAYLTTGEMNgd-waTAYL 294 Candidatus Abys...
PKK85082     190 Tgssgg---vesnsNHTAYHSGMSAWCGNCHGDFHNvgs--tmkHPTDHtlgat--iatnYNLYNGTEDITggaaaTAYL 262 candidate divis...
RMF74431     210 Esn----------sNHTAYNAGMSDWCATCHGDYHTgggasgfkHPTGEslgse--iaanYNLYEGTGTYTgd-gtDAYL 276 Acidobacteria b...
Feature 1                                           ### ## ##     ##                             
6NEF_A       292 SLAPFEEGTADytvlkghakiddtaltGADATSNVNCLSCHRAHASGFDSMTRFNlayEFTTIADASGNsiygtdpntss 371 Geobacter sulfu...
RME20128     267 AMVPFEDPANTtts-----------taGPSATSQVSCITCHRAHASSAPNSGRWDfnvTFLSEDGVESG----------- 324 candidate divis...
PJA73706     260 AEVPFEDAANTtss-----------taGPGAGSQVSCITCHRAHASSAPDAGRWD---FSVTLLEEDGAis--------- 316 bacterium CG_4_...
KAA3632789   271 AEVPFEDAANTats-----------taGPTAASQVMCLTCHRAHATSAPDMGRWDfgvTLLHEDGDESG----------- 328 Calditrichaeota...
WP_156049117 260 ELVPFEDAAMTtts-----------ttGPTASSQVMCLTCHRAHATSSPDAGRWD---FTISVWSEEGVrs--------- 316 candidate divis...
TFH64014     263 AAVPFEEPTMTtts-----------tdGPLASSQVSCISCHRAHASSAPDIGRWD---FNVTWLSDDGVns--------- 319 candidate divis...
RJP77759     273 TAVPFEDPSSTias-----------taGPSASSEVSCVTCHRAHSTSSPDAGRWD---FAVTLLEEDGHns--------- 329 candidate divis...
RJP72871     295 PLVPFEDAGNTths-----------ttGTTSTSKVMCLTCHRAHASPYPDAGRWDf--GQTWLKESQPSr---------- 351 Candidatus Abys...
PKK85082     263 ADVPFEDAATTtts-----------taGPSSTSKVMCLSCHRAHASSAPNAGRWE---FAVTLLEEDGVes--------- 319 candidate divis...
RMF74431     277 AMVPFEDPTVTtdy-----------vgAASGTSQVMCLTCHRAHASSAPQAGRWD---FNITIWDEEGVes--------- 333 Acidobacteria b...
Feature 1                                    #  ## 
6NEF_A       372 lqGRSVNEMTAAYygrtadkfapYQRALCNKCHA 405 Geobacter sulfurreducens PCA
RME20128     325 --SYAIPDPYNDV----------NQRSLCNKCHN 346 candidate division Zixibacteria bacterium
PJA73706     317 -gSYAIPDPYASP----------NQRSLCNKCHN 339 bacterium CG_4_9_14_3_um_filter_65_15
KAA3632789   329 --SYEIPDPYSSI----------NQRSLCNKCHV 350 Calditrichaeota bacterium
WP_156049117 317 -gTYAIPNPYPNPl--------aDQRSLCNKCHN 341 candidate division Zixibacteria bacterium
TFH64014     320 -gSYPIPNPYGPDv--------eIQRSLCNKCHV 344 candidate division Zixibacteria bacterium
RJP77759     330 -gSYAIPNPYAAQt--------aDQRSLCNKCHN 354 candidate division Zixibacteria bacterium
RJP72871     352 -ePYLAQYDGNPLnl-------lNQRSLCNKCHP 377 Candidatus Abyssubacteria bacterium SURF_17
PKK85082     320 -gSYAIPDPYNSP----------NQRSLCNKCHV 342 candidate division Zixibacteria bacterium HGW-Zixibacteria-1
RMF74431     334 -gSYVIPNPYAATag-------gHQRSLCNKCHA 359 Acidobacteria bacterium

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