Molecular Pathogenesis
Apolipoprotein E (APOE), a 34,000 molecular mass protein, is a major apolipoprotein that controls lipoprotein metabolism. APOE is a component of chylomicrons, very-low-density lipoproteins (VLDL), intermediate-density lipoproteins (LDL), low-density lipoproteins (LDL), and high-density lipoproteins (HDL). As a ligand for the LDL receptor, APOE is required for receptor-mediated clearance of chylomicron and VLDL remnants from circulation. APOE is a ligand for the LDL receptor. The APOE
p.Leu167del variant destabilizes a leucine zipper motif in a critical region of APOE that may weaken the ability of intermediate density lipoproteins and chylomicron remnants to bind to the LDL receptor [Awan et al 2013, Marduel et al 2013].
APOE is synthesized primarily in the liver. However, other organs and tissues synthesize APOE, including the spleen, macrophages, brain, kidneys, gonads, and adrenals. The widespread production of APOE indicates its importance in lipid transport and possibly in additional unrelated roles.
Gene structure.
APOE comprises four exons and three introns spanning 3,597 nucleotides. For a detailed summary of gene and protein information, see Table A, Gene.
Benign variants. Three common benign variants (e2, e3, e4 [or ε2, ε3, ε4]) encode three isoforms (variants) of the APOE protein (APOE2, APOE3, APOE4, respectively) that differ in amino acid sequence at positions 130 and 176.*
APOE2 has cysteine at both positions.
APOE3 has cysteine at 130 and arginine at 176.
APOE4 has arginine at both sites.
*Note: The polymorphic amino acid residues are referred to as:
The allelic variants e2, e3, and e4 are designated by their common names in the literature and not by conventions of the Human Genome Variation Society.
Many studies have sought an association between the APOE e2, e3, and e4 alleles and various phenotypes, including for example:
The homozygous
APOE e2 genotype (e2/e2) is associated with type III hyperlipoproteinemia, a relatively rare disorder characterized by elevated total cholesterol and triglycerides with early cardiovascular disease and tendinous/tuberous xanthomas [
Eichner et al 2002].
Pathogenic variants. See Table 4.
Table 4.
APOE Pathogenic Variants Discussed in This GeneReview
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DNA Nucleotide Change (Alias 1) | Predicted Protein Change (Alias 1) | Reference Sequences |
---|
c.500_502delTCC (499_501delCTC) | p.Leu167del 2 (Leu149del) 3 |
NM_000041.2
NP_000032.1
|
Variants listed in the table have been provided by the authors. GeneReviews staff have not independently verified the classification of variants.
GeneReviews follows the standard naming conventions of the Human Genome Variation Society (varnomen.hgvs.org). See Quick Reference for an explanation of nomenclature.
- 1.
Variant designation that does not conform to current naming conventions
- 2.
Nomenclature in the preprocessed peptide (including the signal peptide)
- 3.
Nomenclature in the processed peptide (after cleavage of the signal peptide)
Normal gene product. The NM_000041.2 transcript encodes a 317-amino acid apolipoprotein E precursor. After cleavage of the 18-amino acid signal peptide, mature APOE is secreted as a 299-amino acid protein with a relative molecular mass of 34,200.
APOE accounts for a significant fraction of the normal variation in plasma cholesterol levels. Studies have estimated the total variance for LDL cholesterol accounted for by APOE at between 1% and 8.3%. APOE contributes more to normal cholesterol variability than any other protein identified in cholesterol metabolism thus far [Eichner et al 2002].
Although other rare protein variants exist, the variant (isoform) proteins APOE2, APOE3, and APOE4 (encoded by the three common benign variants e2, e3, and e4, respectively) have been studied the most. APOE3, the most common protein isoform, is seen in more than 60% of all populations studied [Eichner et al 2002].
The different isoforms have different affinity for binding to the LDL receptor. APOE3 and APOE4 bind with nearly equal affinity whereas APOE2 binds with less than 2% of this affinity [Eichner et al 2002].
On average, APOE2 lowers total cholesterol levels by approximately 14 mg/dL and APOE4 raises them by approximately 8 mg/dL [Eichner et al 2002].
Abnormal gene product. The effect of the APOE p.Leu167del pathogenic variant on the APOE protein has been less well studied than the common variants APOE2 and APOE4 (see Normal gene product). As Leu167 is the fourth residue in a six-amino acid motif that is highly conserved among species, it is likely that deletion of this amino acid would alter the general structure of this highly conserved part of APOE and would influence interaction with lipids and the affinity of APOE to multiple receptors [Marduel et al 2013]. Exact changes are unknown, as only a few individuals with this pathogenic variant have been described.