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BioSample

National Center for Biotechnology Information

Organism: Escherichia coli MS 21-1
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli

Attributes

collection date	not determined
estimated size	5283000
isolation and growth condition	not determined
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
investigation type	missing
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
project name	Escherichia coli MS 21-1
geographic location	not determined
source material identifiers	BEI HM-346
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
strain	MS 21-1
environmental package	missing
isolation source	missing
finishing strategy (depth of coverage)	Level 2: High-Quality Draft57.3x;540
project_type	Reference Genome
misc_param: HMP body site	not determined
nucleic acid extraction	not determined
assembly	Velvet v. 0.7.57
misc_param: HMP supersite	gastrointestinal_tract
sequencing method	Illumina
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf