Warning: The NCBI web site requires JavaScript to function. more...

BioSample

National Center for Biotechnology Information

Result Filters

Uncultivated Ruminococcaceae bacterium UBA5461 genome recovered from SRX691286

Identifiers: BioSample: SAMN06452764; Sample name: Ruminococcaceae bacterium UBA5461; SRA: SRS2036078

Organism: Ruminococcaceae bacterium UBA5461
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; unclassified Oscillospiraceae

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	China: Mianyang
isolate	UBA5461
isolation source	mud
metagenome source	fermentation metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX691286 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	77.18%
contamination_estimated	0.00%
environmental_sample	true
genome_coverage	352.1
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the fermentation metagenome reads: SRR1562011.

Description: Uncultivated genome recovered from an assembly of the SRX691286 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06452764
ID:: 6452764

BioProject SRA Nucleotide

Supplemental Content

Related information

BioProject
BioProject links
SRA
Links to SRA experiments
Nucleotide
Nucleotide links
Assembly
Assembly

Search details

Recent activity

Clear Turn Off Turn On

Uncultivated Ruminococcaceae bacterium UBA5461 genome recovered from SRX691286
Uncultivated Ruminococcaceae bacterium UBA5461 genome recovered from SRX691286

biosample
txid1952401[orgn] AND "isolate UBA5461"[All Fields] (1)
BioSample
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloropl...
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Dictyopteris delicatula]
gi|189308331|gb|ACD87031.1|

Protein
SENP6 SUMO specific peptidase 6 [Homo sapiens]
SENP6 SUMO specific peptidase 6 [Homo sapiens]
Gene ID:26054

Gene
Gene Links for GEO Profiles (Select 55062197) (1)
Gene

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI > DNA & RNA > BioSample