MIGS Cultured Bacterial/Archaeal sample from Citro... - BioSample

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Result Filters

Organism: Citrobacter portucalensis
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex

Attributes

strain	4_7_47CFAA
collection date	not determined
isolation source	missing
host	Homo sapiens
broad-scale environmental context	terrestrial biome [ENVO:00000446]
estimated size	5120000
latitude and longitude	not determined
source material identifiers	BEI HM-299
investigation type	bacteria_archaea
host taxonomy ID	9606 (9606)
local-scale environmental context	human-associated habitat [ENVO:00009003]
isolation and growth condition	not determined
project name	Citrobacter freundii 4_7_47CFAA
geographic location	not determined
reference for biomaterial	not determined
environmental medium	biological product [ENVO:02000043]
environmental package	missing
number of replicons	not determined
project_type	Reference Genome
finishing strategy (depth of coverage)	Level 2: High-Quality Draft14x;36
misc_param: HMP body site	Sigmoid colon
nucleic acid extraction	not determined
misc_param: HMP supersite	gastrointestinal_tract
assembly	Newbler v. 2.3-PostRelease-11/19/2009
sequencing method	not determined
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
note	Originally submitted as Citrobacter freundii 4_7_47CFAA but changed in October 2018 because of ANI results to Citrobacter portucalensis

BioProjects: PRJNA543187
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PRJNA46379 Citrobacter portucalensis strain:4_7_47CFAA
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