MIGS Cultured Bacterial/Archaeal sample from Pyram... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Pyramidobacter piscolens W5455

Identifiers: BioSample: SAMN00002506; Sample name: HMP089-454 Sample; SRA: SRS003142

Organism: Pyramidobacter piscolens W5455
cellular organisms; Bacteria; Synergistota; Synergistia; Synergistales; Dethiosulfovibrionaceae; Pyramidobacter; Pyramidobacter piscolens

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

collection date	not determined
estimated size	2562000
isolation and growth condition	not determined
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
investigation type	missing
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
project name	Pyramidobacter piscolens W5455
geographic location	not determined
source material identifiers	DSM 21147, CCUG 55836
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
strain	W5455
environmental package	missing
isolation source	missing
finishing strategy (depth of coverage)	Level 2: High-Quality Draft110x;140
project_type	Reference Genome
misc_param: HMP body site	not determined
nucleic acid extraction	not determined
assembly	not determined
misc_param: HMP supersite	oral
sequencing method	454
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
type-material	type strain of Pyramidobacter piscolens

Description

Pyramidobacter piscolens is a member of the poorly characterized phylum Synergistes. It is a gram-negative, obligate anaerobe bacillus that has recently been reported in endodontic infections, and therefore may be part of the etiology of periradicular diseases. It is found in the human oral and vaginal cavities. This strain was isolated from the human oral cavity.

Keywords: GSC:MIxS;MIGS:6.0