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Animal sample from Loxodonta africana (African bush elephant) for VGP genome, mLoxAfr1

Identifiers
BioSample: SAMN32756554; Sample name: Animal sample from Loxodonta africana (African bush elephant) for VGP genome, mLoxAfr1; SRA: SRS22448717
Organism
Loxodonta africana (African savanna elephant)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Package
Model organism or animal; version 1.0
Attributes
isolatemLoxAfr1
age2 years 6 months
development stagejuvenile
sexmale
tissueOriginal tissue source of cells is from umbilical cord
biomaterial providerCells derived by Virginia Pearson, cultured by Austin Bow and Xochitl Ambriz Pena
birth dateAug 2, 2019
birth locationLouisville Zoo Kentucky, USA
breeding historyParents originally from Africa
cell lineCultured endothelial cells from umbilical cord; passage 7
collected byAustin Bow
collection date2022-02-22
geographic locationUSA: Louisville Zoo, Kentucky
latitude and longitude38.2057 N 85.7071 W
storage conditions-80oC
treatmentfrozen pellet of 2-4 million cells
Description

The African elephants (Loxodonta) are a genus comprising two living species, the African bush elephant (Loxodonta africana) and the smaller African forest elephant (Loxodonta cyclotis). Both are social herbivores with grey skin, but differ in the size and color of their tusks and in the shape and size of their ears and skulls. Both species are at heavy risk of extinction, where as of 2021, the bush elephant is endangered and the forest elephant is critically endangered according to the IUCN Red List (modified from Wikipedia entry). This sample of Loxodonta africana was collected from a male calf born in Louisville Kentucky Zoo, the endothelial cells derived from the umbilical cord by Virginia Pearson, cultured by Austin Bow and Xochitl Ambriz Pena, and coordinated by Eriona Hysolli, Austin Bow, Sara Ord, and Ben Lamm of Colossal Biosciences and Kathleen Horan of Rockefeller University. The cultured cells were used to create a high-quality reference genome for Colossal Biosciences mammoth project and the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.

BioProjects
PRJNA1092696 Loxodonta africana isolate:mLoxAfr1
Retrieve all samples from this project

PRJNA924322 Loxodonta africana isolate:mLoxAfr1
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PRJNA924321 Loxodonta africana isolate:mLoxAfr1
Retrieve all samples from this project

Submission
G10K, Erich Jarvis; 2023-01-16
Accession:
SAMN32756554
ID:
32756554

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