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This sample represents a MAG derived from the metagenomic sample SAMN17312078

Identifiers
BioSample: SAMEA114587689; SRA: ERS16686838
Organism
Bacteroidales bacterium H4
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; unclassified Bacteroidales
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (DRC)
sample nameH07654-L1_cleanbin_000021
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:03Z
ENA-LAST-UPDATE2023-11-07T00:47:03Z
External IdSAMEA114587689
INSDC center nameICMB
INSDC first public2023-11-07T00:47:03Z
INSDC last update2023-11-07T00:47:03Z
INSDC statuspublic
Submitter IdH07654-L1_cleanbin_000021
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score95.83
completeness softwareMAGSCoT
contamination score0.83
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312078
scientific_nameBacteroidales bacterium H4
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114587689
ID:
38179328

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