This sample represents a MAG derived from the meta... - BioSample

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Result Filters

Organism: Bacteroidales bacterium H4
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; unclassified Bacteroidales

Attributes

broad-scale environmental context	hominid body
collection date	2011
environmental medium	feces
geographic location	Democratic Republic of the Congo
investigation type	metagenome-assembled genome
isolation source	Feces of Homo sapiens (DRC)
sample name	H07654-L1_cleanbin_000021
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2023-11-07T00:47:03Z
ENA-LAST-UPDATE	2023-11-07T00:47:03Z
External Id	SAMEA114587689
INSDC center name	ICMB
INSDC first public	2023-11-07T00:47:03Z
INSDC last update	2023-11-07T00:47:03Z
INSDC status	public
Submitter Id	H07654-L1_cleanbin_000021
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades
binning parameters	refined binning from maxbin2 metabat2 vamb and concoct
binning software	MAGSCoT
completeness score	95.83
completeness software	MAGSCoT
contamination score	0.83
contamination software	MAGSCoT
geographic location (latitude)	not collected
geographic location (longitude)	not collected
local environmental context	hominid gut
metagenomic source	Human gut
sample derived from	SAMN17312078
scientific_name	Bacteroidales bacterium H4
taxonomic classification	gtdtbk
taxonomic identity marker	gtdtbtk marker gene sets

BioProject: PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

This sample represents a MAG derived from the metagenomic sample SAMN17312078
This sample represents a MAG derived from the metagenomic sample SAMN17312078

biosample
BioSample links for Nucleotide (Select 2631419440) (1)
BioSample
Bacteroidales bacterium H4 isolate H07654-L1_cleanbin_000021 genome assembly, co...
Bacteroidales bacterium H4 isolate H07654-L1_cleanbin_000021 genome assembly, contig: Spades_H07654-L1_contig_472, whole genome shotgun sequence
gi|2631419450|emb|CAVJMX010000009.1 |WGS:CAVJMX01|Spades_H07654-L1_contig_472

Nucleotide
Bacteroidales bacterium H4 isolate H07654-L1_cleanbin_000021, whole genome shotg...
Bacteroidales bacterium H4 isolate H07654-L1_cleanbin_000021, whole genome shotgun sequencing project
gi|2631419459|emb|CAVJMX000000000.1 MX010000000

Nucleotide