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a83b64f6-619d-4c2f-b73e-04070e311a9b-asg-MAGScoT_cleanbin_000059

Identifiers
BioSample: SAMEA114406849; SRA: ERS16395523
Organism
Planctomycetota bacterium
cellular organisms; Bacteria; PVC group; Planctomycetota; unclassified Planctomycetota
Attributes
broad-scale environmental contextaquatic biome
collected byJOHANA ROTTEROVA
collection date2021-10-02
depth1899-12-30
environmental mediumciliate culture
geographic locationUSA
host life stagevegetative cell
hostMetopus sp. strain SALT15A
host taxonomy ID2980494 (2980494)
identified byJOHANA ROTTEROVA
investigation typemetagenome-assembled genome
isolation sourceCiliate: Metopus sp. strain SALT15A
tissueWHOLE ORGANISM
project nameASG
sample collection device or methodhand collected into a 50 ml tube
sample namea83b64f6-619d-4c2f-b73e-04070e311a9b
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
GALUniversity of British Columbia
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Ida83b64f6-619d-4c2f-b73e-04070e311a9b
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
barcoding centerUNIVERSITY OF RHODE ISLAND
binning parameterscoverage; graph; hic-mapping
binning softwareMAGScoT (version 1.0.0); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionUNIVERSITY OF RHODE ISLAND
completeness score94.34
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score4.55
culture_or_strain_idSALT15A strain in culture collection of Roxanne Beinart, GSO, URI, RI, USA
geographic location (latitude)41.49
geographic location (longitude)-71.42
geographic location (region and locality)RHODE ISLAND | NARRAGANSETT | UNIVERSITY OF RHODE ISLAND
habitatsalt marsh sediment
identifier_affiliationUNIVERSITY OF RHODE ISLAND
local environmental contextmarine salt marsh biome
metagenomic sourceciliate metagenome
number of standard tRNAs extracted45
original collection date2019-08-22
original collection locationUSA | MASSACHUSETTS | FALMOUTH | SALT POND
original geographic location (latitude)41.540639
original geographic location (longitude)-70.630611
sample derived fromSAMEA114406788
scientific_namePlanctomycetota bacterium
sequencing methodPacbio Sequel II
specimen_idUOBC0000025
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification defined by topology and ANI
tolidpiMetSpec1.Planctomycetota_2
BioProjects
PRJEB67189 piMetSpec1.metagenome
Retrieve all samples from this project

PRJEB67001 piMetSpec1.Planctomycetota_2
Retrieve all samples from this project

Submission
EBI; 2023-09-22
Accession:
SAMEA114406849
ID:
37510393

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