Metagenome-Assembled Genome: SRR17301048_bin.10_Me... - BioSample

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Result Filters

Organism: uncultured Rothia sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; environmental samples

Attributes

broad-scale environmental context	human digestive system
collection date	2020-08-11
environmental medium	saliva
geographic location	China
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	In-depth analysis of saliva samples from 3-year-old children with high caries and caries-free children using metagenomic sequencing technology.
sample name	SRR17301048_bin.10_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR17301048_bin.10_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	93.11
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMN24290143
scientific_name	uncultured Rothia sp.
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Micrococcaceae;g__Rothia;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR17301048 of study SRP352022.