| broad-scale environmental context | human digestive system |
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| collection date | not provided |
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| environmental medium | saliva |
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| geographic location | not provided |
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| investigation type | metagenome-assembled genome |
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| isolation source | oral metagenome |
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| project name | Deep shotgun metagenome sequencing (>10 Gb per sample) of bulk DNA extracted from saliva of MRONJ patients and healthy controls (initially 5 vs 5 individuals) was performed to overcome limitations of prior studies explored the association between MRONJ and microbial or viral infection. The sequence data after the preprocessing and removal of human reads are registered, including those of additional 5 patients. |
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| sample name | DRR247351_bin.12_MetaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| INSDC center name | EMG |
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| Submitter Id | DRR247351_bin.12_MetaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.3 |
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| broker name | EBI-EMG |
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| completeness score | 97.78 |
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| completeness software | CheckM |
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| contamination score | 1.33 |
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| geographic location (latitude) | not provided |
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| geographic location (longitude) | not provided |
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| local environmental context | oral cavity |
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| metagenomic source | oral metagenome |
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| sample derived from | SAMD00248614 |
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| scientific_name | uncultured Rothia sp. |
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| sequencing method | HiSeq X Ten |
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| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Micrococcaceae;g__Rothia;s__ |
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| taxonomic identity marker | multi-marker approach |
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