| broad-scale environmental context | human digestive system |
|---|
| collection date | 2019-02-13 |
|---|
| environmental medium | saliva |
|---|
| geographic location | Papua New Guinea |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | oral metagenome |
|---|
| project name | Metagenomic sequencing of saliva samples from 65 individuals living in different environments of Papua New Guinea (coastal, highlands, lowlands) for the first characterization of oral microbiome diversity in Papua New Guinea. |
|---|
| sample name | ERR10228837_bin.5_MetaWRAP_v1.3_MAG |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| INSDC center name | EMG |
|---|
| Submitter Id | ERR10228837_bin.5_MetaWRAP_v1.3_MAG |
|---|
| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
|---|
| assembly software | metaspades v3.15.3 |
|---|
| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
|---|
| binning software | MetaWRAP v1.3 |
|---|
| broker name | EBI-EMG |
|---|
| completeness score | 93.15 |
|---|
| completeness software | CheckM |
|---|
| contamination score | 0.81 |
|---|
| geographic location (latitude) | -5.7999968 |
|---|
| geographic location (longitude) | 145.0333332 |
|---|
| local environmental context | oral cavity |
|---|
| metagenomic source | oral metagenome |
|---|
| sample derived from | SAMEA110418590 |
|---|
| scientific_name | uncultured Atopobiaceae bacterium |
|---|
| sequencing method | HiSeq X Five |
|---|
| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella;s__ |
|---|
| taxonomic identity marker | multi-marker approach |
|---|