Metagenome-Assembled Genome: SRR5535749_bin.3_Meta... - BioSample

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Metagenome-Assembled Genome: SRR5535749_bin.3_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114402882; SRA: ERS16391572

Organism: Fastidiosipila sanguinis
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Fastidiosipila

Attributes

broad-scale environmental context	human excretory system
collection date	2013-03-27
environmental medium	urine
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	urine metagenome
project name	Urinary tract infection is thought to result from the growth of a limited number of uropathogenic organisms in an otherwise sterile environment. We revisited this concept by analyzing clean-catch urine samples representing a spectrum of clinical laboratory profiles. Whole genome shotgun sequencing was served to described the microbial metagenome. Infection was associated with dominant organisms in the metagenome as well as novel potential pathogens that are difficult to grow in routine cultures.
sample name	SRR5535749_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	SRR5535749_bin.3_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	80.5
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	urethra
metagenomic source	urine metagenome
sample derived from	SAMN06899163
scientific_name	Fastidiosipila sanguinis
sequencing method	Illumina HiSeq 2500
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Fastidiosipila;s__Fastidiosipila sanguinis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR5535749 of study SRP107013.