Metagenome-assembled genome: UBS5hMA55E_bin.5.MAG

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Pseudoglutamicibacter cumminsii
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Pseudoglutamicibacter

Attributes

collection date	2014-04-07
broad-scale environmental context	human-associated habitat
local-scale environmental context	human skin
environmental medium	skin
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human skin
project name	Skin Microbial Genome Catalogue
sample name	UBS5hMA55E_bin.5.MAG
ENA first public	2022-06-13
ENA last update	2022-06-13
ENA-CHECKLIST	ERC000047
External Id	SAMEA110088985
INSDC center alias	NIH/NHGRI
INSDC center name	NIH/NHGRI
INSDC first public	2022-06-13T04:18:27Z
INSDC last update	2022-06-13T04:18:27Z
INSDC status	public
Submitter Id	UBS5hMA55E_bin.5.MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaSPAdes v.3.13.0
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning software	metaWRAP v1.2.1
completeness score	95.81
completeness software	CheckM v1.1.2
contamination score	95.81
geographic location (latitude)	38.984653
geographic location (longitude)	-77.09471
metagenomic source	human skin metagenome
sample derived from	SAMN09715298
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

Description: This sample represents a Per Sample Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR7687933,SRR7687934,SRR7687935,SRR7687936,SRR7687937.

BioProject: PRJEB47281 Skin Microbial Genome Catalogue
Retrieve all samples from this project

BioSample links for Nucleotide (Select 2556530446) (1)
BioSample
Metagenome-assembled genome: UBS5hMA55E_bin.5.MAG
Metagenome-assembled genome: UBS5hMA55E_bin.5.MAG

biosample
Assembly for Nucleotide (Select 2556530423) (1)
Assembly
MAG: Pseudoglutamicibacter cumminsii isolate UBS5hMA55E_bin.5.MAG NODE_763_lengt...
MAG: Pseudoglutamicibacter cumminsii isolate UBS5hMA55E_bin.5.MAG NODE_763_length_4721_cov_16.229104, whole genome shotgun sequence
gi|2556530456|ref|NZ_CALUAG01000005 gnl|WGS:NZ_CALUAG01|NODE_763_length_4721_cov_16.229104

Nucleotide
MAG: Pseudoglutamicibacter cumminsii isolate UBS5hMA55E_bin.5.MAG NODE_461_lengt...
MAG: Pseudoglutamicibacter cumminsii isolate UBS5hMA55E_bin.5.MAG NODE_461_length_8152_cov_16.503396, whole genome shotgun sequence
gi|2556530427|ref|NZ_CALUAG01000004 gnl|WGS:NZ_CALUAG01|NODE_461_length_8152_cov_16.503396

Nucleotide