MIGS Cultured Bacterial/Archaeal sample from Rothi... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Rothia mucilaginosa ATCC 25296

Identifiers: BioSample: SAMN00001919; Sample name: HMP030-454 Sample; SRA: SRS001213

Organism: Rothia mucilaginosa ATCC 25296
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; Rothia mucilaginosa

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

collection date	not determined
estimated size	2255000
isolation and growth condition	not determined
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
investigation type	missing
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
project name	Rothia mucilaginosa ATCC 25296
geographic location	not determined
source material identifiers	ATCC 25296, CCM 2417, DSM 20746, NCTC 10663, PCM 2415
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
strain	ATCC 25296
environmental package	missing
culture collection	ATCC:25296
isolation source	missing
finishing strategy (depth of coverage)	Level 2: High-Quality Draft28x;25
project_type	Reference Genome
misc_param: HMP body site	Pharyngeal mucosa
nucleic acid extraction	not determined
assembly	not determined
misc_param: HMP supersite	airways
sequencing method	454
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf
type-material	type strain of Rothia mucilaginosa

Description

Rothia mucilaginosa is a gram-positive, cocci-shaped bacterium that inhabits the oral cavity. The bacterium is considered an opportunistic pathogen and has been associated with endocarditis, meningitis, and peritonitis.

Keywords: GSC:MIxS;MIGS:6.0