| broad-scale environmental context | Human digestive system |
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| collection date | 2018 |
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| environmental medium | faeces |
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| geographic location | Germany |
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| investigation type | metagenome-assembled genome |
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| isolation source | human feces metagenome |
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| project name | Changes in intestinal microbiome composition have been described in animal models of Alzheimer`s disease (AD) and AD patients. Here we investigated how well taxonomic and functional intestinal microbiome data can be used to discriminate between amyloid-positive AD patients and cognitively healthy elderly controls. |
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| sample name | ERR9578175_bin.8_MetaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-07-13T16:22:54Z |
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| ENA-LAST-UPDATE | 2023-07-13T16:22:54Z |
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| External Id | SAMEA114062804 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2023-07-13T16:22:54Z |
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| INSDC last update | 2023-07-13T16:22:54Z |
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| INSDC status | public |
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| Submitter Id | ERR9578175_bin.8_MetaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaspades v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 100 |
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| completeness software | CheckM |
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| contamination score | 1.27 |
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| geographic location (latitude) | 48.5216364 |
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| geographic location (longitude) | 9.0576448 |
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| local environmental context | colon |
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| metagenomic source | human feces metagenome |
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| sample derived from | SAMEA13959688 |
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| scientific_name | Megamonas funiformis |
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| sequencing method | Illumina HiSeq 2000 |
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| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas;s__Megamonas funiformis |
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| taxonomic identity marker | multi-marker approach |
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