Metagenome-Assembled Genome: ERR9578175_bin.8_Meta... - BioSample

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Metagenome-Assembled Genome: ERR9578175_bin.8_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114062804; SRA: ERS16046667

Organism: Megamonas funiformis
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Megamonas

Attributes

broad-scale environmental context	Human digestive system
collection date	2018
environmental medium	faeces
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Changes in intestinal microbiome composition have been described in animal models of Alzheimer`s disease (AD) and AD patients. Here we investigated how well taxonomic and functional intestinal microbiome data can be used to discriminate between amyloid-positive AD patients and cognitively healthy elderly controls.
sample name	ERR9578175_bin.8_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T16:22:54Z
ENA-LAST-UPDATE	2023-07-13T16:22:54Z
External Id	SAMEA114062804
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-13T16:22:54Z
INSDC last update	2023-07-13T16:22:54Z
INSDC status	public
Submitter Id	ERR9578175_bin.8_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	1.27
geographic location (latitude)	48.5216364
geographic location (longitude)	9.0576448
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMEA13959688
scientific_name	Megamonas funiformis
sequencing method	Illumina HiSeq 2000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Megamonas;s__Megamonas funiformis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR9578175 of study ERP132305.