| broad-scale environmental context | Human digestive system |
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| collection date | 2018-01-17 |
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| environmental medium | faeces |
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| geographic location | USA |
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| investigation type | metagenome-assembled genome |
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| isolation source | human feces metagenome |
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| project name | Fecal microbiota transplantation (FMT) is an effective therapy for recurrent Clostridioides difficile infection (CDI). However, the overall mechanisms of FMT have not been comprehensively elucidated, and the safety of FMT has recently become a serious concern because of the occurrence of drug-resistant bacteremia transmitted by FMT. We investigated whether the functional restoration of the bacteriomes and viromes by FMT could be an indicator of successful FMT. |
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| sample name | SRR13494480_bin.12_MetaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-07-18T16:27:39Z |
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| ENA-LAST-UPDATE | 2023-07-18T16:27:39Z |
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| External Id | SAMEA114096537 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2023-07-18T16:27:39Z |
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| INSDC last update | 2023-07-18T16:27:39Z |
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| INSDC status | public |
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| Submitter Id | SRR13494480_bin.12_MetaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaspades v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | MetaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 86.51 |
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| completeness software | CheckM |
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| contamination score | 0.0 |
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| geographic location (latitude) | 42.2 |
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| geographic location (longitude) | -71.06 |
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| local environmental context | colon |
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| metagenomic source | human feces metagenome |
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| sample derived from | SAMN17393296 |
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| scientific_name | Ruthenibacterium lactatiformans |
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| sequencing method | Illumina HiSeq 2500 |
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| taxonomic classification | The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruthenibacterium;s__Ruthenibacterium lactatiformans |
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| taxonomic identity marker | multi-marker approach |
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