| collection date | 2018-06 |
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| broad-scale environmental context | mixed forest |
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| local-scale environmental context | mountain slope |
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| environmental medium | lichen thallus |
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| geographic location | Canada |
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| investigation type | metagenome-assembled genome |
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| isolation source | Pelleted sediment obtained by soaking a thallus of Alectoria sarmentosa in hot water |
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| project name | PRJEB40332 |
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| sample name | GT57_lecanoromycete |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2021-03-10T08:06:47Z |
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| ENA-LAST-UPDATE | 2020-10-13T00:08:34Z |
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| External Id | SAMEA7422938 |
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| INSDC center name | Spribille Lab |
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| INSDC first public | 2021-03-10T08:06:47Z |
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| INSDC last update | 2020-10-13T00:08:34Z |
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| INSDC status | public |
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| Submitter Id | GT57_lecanoromycete |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes (v3.13, Nurk et al. 2017) |
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| binning parameters | coverage and kmer |
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| binning software | CONCOCT (Alneberg et al. 2014) |
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| completeness score | 98.58 |
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| completeness software | EukCC (Saary et al. 2019) |
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| contamination score | 0.33 |
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| feature prediction | Funannotate (v1.5.3 github.com/nextgenusfs/funannotate) |
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| geographic location (latitude) | 51.76 |
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| geographic location (longitude) | 119.94 |
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| geographic location (region and locality) | edge of Wells Gray Provincial Park, British Columbia |
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| metagenomic source | lichen metagenome |
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| reference database(s) | InterProScan (v1.5.3, Jones et al. 2014), Eggnog-Mapper (v1.0.0, Huerta-Cepas et al. 2017), Pfam (v32.0, El-Gebali et al. 2019), gene2product (v1.32, https://github.com/nextgenusfs/gene2product), dbCAN (v7.0, Huang et al. 2018), MEROPS (v12.0, Rawlings et al. 2018), UniProtKb (downloaded Feb 2019, The UniProt Consortium 2019) |
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| sample derived from | ERS5064121 |
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| scientific_name | Alectoria sarmentosa |
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| sequencing method | Illumina HiSeq X |
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| taxonomic identity marker | phylogenomic tree |
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