Metagenome-assembled genome: SRR15235649_bin.7_met... - BioSample

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Metagenome-assembled genome: SRR15235649_bin.7_metaWRAP_v1.1_MAG

Identifiers: BioSample: SAMEA10220439; SRA: ERS7876795

Organism: uncultured Rothia sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Human saliva metagenome
local-scale environmental context	Human oral cavity
environmental medium	Saliva
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human saliva metagenome
project name	Saliva samples were analyzed based on the metagenome sequencing technique in this study, aiming at understanding the community structure and functional characteristics of oral microorganisms in caries free children with different caries risks.
sample name	SRR15235649_bin.7_metaWRAP_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2021-09-29
ENA-LAST-UPDATE	2021-09-29
External Id	SAMEA10220439
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-29T16:16:44Z
INSDC last update	2021-09-29T16:16:44Z
INSDC status	public
Submitter Id	SRR15235649_bin.7_metaWRAP_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.11
completeness software	CheckM
contamination score	0.67
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human saliva metagenome
sample derived from	SAMN20310718
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR15235649 of study SRP329673.

BioProject: PRJEB47694
Retrieve all samples from this project

Submission: EBI; 2021-10-01

Accession:: SAMEA10220439
ID:: 21966026

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BioSample links for Nucleotide (Select 2538313292) (1)
BioSample
Metagenome-assembled genome: SRR15235649_bin.7_metaWRAP_v1.1_MAG
Metagenome-assembled genome: SRR15235649_bin.7_metaWRAP_v1.1_MAG

biosample
MAG: Rothia mucilaginosa isolate RAGGC_24 NODE_73_length_44478_cov_16.598721, wh...
MAG: Rothia mucilaginosa isolate RAGGC_24 NODE_73_length_44478_cov_16.598721, whole genome shotgun sequence
gi|2568215210|ref|NZ_JAPJNX01000001 gnl|WGS:NZ_JAPJNX01|NODE_73_length_44478_cov_16.598721

Nucleotide
Homo sapiens TNF superfamily member 14 (TNFSF14), transcript variant 1, mRNA
Homo sapiens TNF superfamily member 14 (TNFSF14), transcript variant 1, mRNA
gi|1890278497|ref|NM_003807.5|

Nucleotide