| collection date | 2018-04-20 |
|---|
| broad-scale environmental context | freshwater lake |
|---|
| local-scale environmental context | lake |
|---|
| environmental medium | fresh water |
|---|
| geographic location | Czech Republic |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | Freshwater lake |
|---|
| project name | PRJEB52406 |
|---|
| sample name | HRS-ES8-bin-51 |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| ENA-FIRST-PUBLIC | 2023-04-13 |
|---|
| ENA-LAST-UPDATE | 2023-04-13 |
|---|
| External Id | SAMEA110046779 |
|---|
| INSDC center alias | BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO |
|---|
| INSDC center name | BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO |
|---|
| INSDC first public | 2023-04-13T16:27:03Z |
|---|
| INSDC last update | 2023-04-13T16:27:03Z |
|---|
| INSDC status | public |
|---|
| Submitter Id | HRS-ES8-bin-51 |
|---|
| assembly quality | Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs |
|---|
| assembly software | MEGAHIT; kmer set 49,69,89,109,129,149 |
|---|
| binning parameters | coverage and kmer |
|---|
| binning software | MetaBAT2 |
|---|
| completeness score | 86.81 |
|---|
| completeness software | checkm |
|---|
| contamination score | 0.2 |
|---|
| geographic location (latitude) | 48.846361 |
|---|
| geographic location (longitude) | 14.487639 |
|---|
| metagenomic source | freshwater metagenome |
|---|
| sample derived from | ERS11712860 |
|---|
| scientific_name | Candidatus Fokinia solitaria |
|---|
| sequencing method | Illumina NovaSeq 6000 |
|---|
| taxonomic identity marker | multi-marker approach |
|---|