Metagenome-assembled genome: SRR17635647_bin.8_met... - BioSample

Metagenome-assembled genome: SRR17635647_bin.8_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA111539147; SRA: ERS13649211

Organism: Propionimicrobium lymphophilum
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Propionibacteriales; Propionibacteriaceae; Propionimicrobium

Attributes

broad-scale environmental context	Human reproductive system
collection date	2008-01-01
environmental medium	Vagina
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	vaginal metagenome
project name	The overarching goal of the VMRC is to identify correlates of stability and resilience in the vaginal microbiota and leverage these features to devise a framework for an intervention to maintain/restore vaginal health.
sample name	SRR17635647_bin.8_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-11-02
ENA-LAST-UPDATE	2022-11-02
External Id	SAMEA111539147
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-11-02T04:23:11Z
INSDC last update	2022-11-02T04:23:11Z
INSDC status	public
Submitter Id	SRR17635647_bin.8_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	99.12
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	39.2904
geographic location (longitude)	-76.6122
local environmental context	Vagina
metagenomic source	vaginal metagenome
sample derived from	SAMN25037652
sequencing method	Illumina HiSeq 4000
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinobacteria;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionimicrobium;s__Propionimicrobium lymphophilum
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17635647 of study SRP355266.

BioProject: PRJEB56771
Retrieve all samples from this project

Submission: EBI; 2022-11-03

Accession:: SAMEA111539147
ID:: 31590899

BioProject Nucleotide

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

Links from Nucleotide

Metagenome-assembled genome: SRR17635647_bin.8_metaWRAP_v1.3_MAG

Supplemental Content

Related information

Recent activity