| collection date | 2016-07-01 |
|---|
| broad-scale environmental context | Engineered |
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| local-scale environmental context | Engineered |
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| environmental medium | Engineered |
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| geographic location | not provided |
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| investigation type | metagenome-assembled genome |
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| isolation source | metagenome |
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| project name | we examined CIP removal and biodegradation using a sulfate-reducing upflow sludge bed (SRUSB) reactor during long-term operation. The ARGs in SRB sludge samples were also examined based on the high-throughput sequencing technique, to elucidate the possible degradation mechanism of CIP in the SRB sludge system based on the change in ARGs. |
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| sample name | SRR6007445_bin.118_CONCOCT_v1.1_MAG |
|---|
| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2023-01-03 |
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| ENA-LAST-UPDATE | 2023-01-03 |
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| External Id | SAMEA14082215 |
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| INSDC center alias | EBI |
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| INSDC center name | European Bioinformatics Institute |
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| INSDC first public | 2023-01-03T00:32:28Z |
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| INSDC last update | 2023-01-03T00:32:28Z |
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| INSDC status | public |
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| Submitter Id | SRR6007445_bin.118_CONCOCT_v1.1_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaspadesv3.12.0 |
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| binning parameters | Default |
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| binning software | CONCOCT v1.1 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 87.91 |
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| completeness software | CheckM |
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| contamination score | 1.29 |
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| geographic location (latitude) | not provided |
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| geographic location (longitude) | not provided |
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| metagenomic source | metagenome |
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| sample derived from | SAMN07551449 |
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| scientific_name | uncultured Sulfurovum sp. |
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| sequencing method | Illumina HiSeq 3000 |
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| taxonomic identity marker | multi-marker approach |
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