| broad-scale environmental context | Fish digestive system |
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| collection date | 2016-03-21 |
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| environmental medium | Gut content |
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| geographic location | Brazil |
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| investigation type | metagenome-assembled genome |
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| isolation source | fish gut metagenome |
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| project name | Influence of florfenicol, a broad-spectrum fluorine derivative of chloramphenicol, which is one of the most frequently used antibiotic in aquaculture, on the composition, function and distribution of ARGs and MGEs in the gut microbiome of Piaractus mesopotamicus, |
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| sample name | SRR7610121_bin.5_metaWRAP_v1.3_MAG |
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| ENA-CHECKLIST | ERC000047 |
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| ENA-FIRST-PUBLIC | 2022-10-17 |
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| ENA-LAST-UPDATE | 2022-10-17 |
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| External Id | SAMEA111477436 |
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| INSDC center alias | EMG |
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| INSDC center name | EMG |
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| INSDC first public | 2022-10-17T00:34:45Z |
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| INSDC last update | 2022-10-17T00:34:45Z |
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| INSDC status | public |
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| Submitter Id | SRR7610121_bin.5_metaWRAP_v1.3_MAG |
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| assembly quality | Many fragments with little to no review of assembly other than reporting of standard assembly statistics |
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| assembly software | metaSPAdes v3.15.3 |
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| binning parameters | MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters. |
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| binning software | metaWRAP v1.3 |
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| broker name | EMG broker account, EMBL-EBI |
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| completeness score | 64.04 |
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| completeness software | CheckM |
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| contamination score | 1.12 |
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| geographic location (latitude) | not provided |
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| geographic location (longitude) | not provided |
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| local environmental context | Gut |
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| metagenomic source | fish gut metagenome |
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| sample derived from | SAMN09711564 |
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| sequencing method | Illumina MiSeq |
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| taxonomic classification | The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Cetobacterium;s__Cetobacterium somerae |
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| taxonomic identity marker | multi-marker approach |
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