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CDC Sars CoV2 Sequencing Baseline Constellation

Identifiers
BioSample: SAMN23799487; SRA: SRS12814058; CDC-OAMD: SARS-CoV-2/Human/USA/FL-CDC-ATM-S6JEKKUZV/2021
Organism
Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus
Package
SARS-CoV-2: clinical or host-associated; version 1.0
Attributes
isolateSARS-CoV-2/Human/USA/FL-CDC-ATM-S6JEKKUZV/2021
collected by'Helix'
collection date2021-11-28
isolation sourcenasal swab
geographic locationUSA: Florida
hostHomo sapiens
host diseaseCOVID-19
host sexmale
host age41
collection deviceNasal swab
collection method Nasal swab
purpose of sequencingbaseline surveillance (random sampling)
host_raceWhite
diagnostic_gene_name_1N
diagnostic_pcr_protocol_1Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_1Unknown
diagnostic_gene_name_2ORF1ab
diagnostic_pcr_protocol_2Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_2Unknown
diagnostic_gene_name_3S
diagnostic_pcr_protocol_3Helix COVID-19 and Flu Test
diagnostic_pcr_Ct_value_3Unknown
lineage/clade nameAY.39
BioProject
PRJNA720050 Severe acute respiratory syndrome coronavirus 2
Retrieve all samples from this project

Submission
CDC-OAMD; 2021-12-09
Accession:
SAMN23799487
ID:
23799487

BioProject SRA Nucleotide

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