MIGS Cultured Bacterial/Archaeal sample from Coryn... - BioSample

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MIGS Cultured Bacterial/Archaeal sample from Corynebacterium amycolatum SK46

Identifiers: BioSample: SAMN00000714; Sample name: HMP033-454 Sample; SRA: SRS001042

Organism: Corynebacterium amycolatum SK46
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium amycolatum

Package: MIGS: cultured bacteria/archaea; version 6.0

Attributes

collection date	not determined
estimated size	2514000
isolation and growth condition	not determined
host	Homo sapiens
latitude and longitude	not determined
broad-scale environmental context	terrestrial biome [ENVO:00000446]
investigation type	missing
local-scale environmental context	human-associated habitat [ENVO:00009003]
host taxonomy ID	9606 (9606)
project name	Corynebacterium amycolatum SK46
geographic location	not determined
source material identifiers	BEI HM-109
environmental medium	biological product [ENVO:02000043]
reference for biomaterial	not determined
number of replicons	not determined
strain	SK46
environmental package	missing
isolation source	missing
finishing strategy (depth of coverage)	Level 6: Finished20x;48
project_type	Reference Genome
misc_param: HMP body site	Right arm
nucleic acid extraction	not determined
assembly	CA 5.1
misc_param: HMP supersite	skin
sequencing method	454-GS-FLX
sop	http://hmpdacc.org/doc/CommonGeneAnnotation_SOP.pdf

Description

Corynebacterium amycolatum is a gram-positive, aerobe with irregular morphology. The bacterium has been isolated from the skin and in immunosuppressed individuals it can cause nosocomial endocarditis or fatal sepsis.

Keywords: GSC:MIxS;MIGS:6.0

Links: Human Microbiome Project at J. Craig Venter Institute

BioProjects: PRJNA543187
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PRJNA31007 Corynebacterium amycolatum SK46
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