Metagenome-assembled genome: SRR3880206_bin.2_Meta... - BioSample

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Result Filters

Organism: Trichodesmium erythraeum
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Trichodesmium

Attributes

collection date	not provided
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Metagenome sequences from enrichment cultures of Trichodesmium erythraeum IMS101 Metagenome
sample name	SRR3880206_bin.2_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9694279
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	SRR3880206_bin.2_MetaBAT_v2.12.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.49
completeness software	CheckM
contamination score	0.22
geographic location (latitude)	34.0
geographic location (longitude)	-118.0
metagenomic source	marine metagenome
sample derived from	SAMN05368344
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3880206 of study SRP078343.