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Bacterial, clinical or host-associated sample for Escherichia coli O157:H7 str. SAKAI (EHEC)

Identifiers
BioSample: SAMN01911278; Sample name: Escherichia coli O157:H7 str. Sakai; SRA: SRS391048
Organism
Escherichia coli O157:H7 str. Sakai
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; Escherichia coli O157:H7
Package
Pathogen: clinical or host-associated; version 1.0
Attributes
collection date1996
geographic locationJapan: Sakai City, Osaka prefecture
latitude and longitudeMissing
isolation sourceHuman intestinal microflora
hostHomo sapiens
host diseaseHemorrhagic colitis, HUS
collected byM Yoh, T Honda
host tissue sampledHuman feces
host descriptiontypical patient during the Sakai outbreak
culture collectionATCC:BAA-460
serotypeE. coli O157:H7
pathotypeEHEC, STEC
strainSAKAI (EHEC)
Sequencing CenterRIKEN
GOLDGc00046
GenbankBA000007
RefseqNC_002695
Description

Full genome sequenced type strain Escherichia coli O157:H7 str. SAKAI. This strain is associated with Hamburger disease, which is caused by the contamination of meat products by enterohemorrhagic E. coli (EHEC). The identifier O157:H7 refers to the serotype of EHEC, and reflects the specific antigenic markers found on the surface of the cell. EHEC attaches and effaces to cells in the large intestine.There are numerous differences that distinguish O157:H7 from K-12, hundreds of them associated with genomic islands in either strain, including at least 9 large PAIs in O157:H7 that encode virulence factors. A type III secretion system, the locus of enterocyte effacement, numerous toxins and adhesins, as well as fimbrial gene clusters and iron uptake systems are found in these PAIs. Pathogenicity genes are also found on the plasmid pO157. Escherichia coli O157:H7 strain Sakai. This strain of O157:H7 was isolated in a 1996 outbreak in Sakai, Japan.

BioProject
PRJNA226 Escherichia coli O157:H7 str. Sakai
Retrieve all samples from this project

Submission
ATCC, Sebastian Juenemann; 2013-02-05
Accession:
SAMN01911278
ID:
1911278

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